FC872510

Overview
NameFC872510
Unique NameFC872510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872510_ssr33 microsatellite FC872510_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9971 contig Ccv1_Contig9971:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA11_ARATH (Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.834e-18
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   28 FQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPESA 231
            FQ    EFLGAFASTVPLSW  WLLCILIG+VSM +AV +KCIPV+ +    +HHDGYE +PSGP  +
Sbjct:  961 FQVIIVEFLGAFASTVPLSWQHWLLCILIGSVSMILAVGLKCIPVESN----RHHDGYELLPSGPSDS 1024          
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA4_ARATH (Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   25 LFQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPESA 231
            +FQ    EFLGAFASTVPLSW  WLL ILIG+++M +AV++KC+PV+       HHDGY+ +PSGP S+
Sbjct:  963 VFQVIIVEFLGAFASTVPLSWQHWLLSILIGSLNMIVAVILKCVPVESR----HHHDGYDLLPSGPSSS 1027          
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA6_ORYSJ (Probable calcium-transporting ATPase 6, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os05g0495600 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   25 LFQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPE 225
            +FQ    EFLG FA+TVPLS   WLL ++IG++SM I+V++KCIPV+ ++   + H GYE IP GPE
Sbjct:  954 IFQVIIVEFLGTFANTVPLSGELWLLSVVIGSISMIISVILKCIPVEFNKTNTKPH-GYELIPEGPE 1019          
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA3_ORYSJ (Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   28 FQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPES 228
            FQ    E LG FA+TV LS   WL  +LIG+V + I  ++KCIPV+        HDGY  IP+GP +
Sbjct:  976 FQVIMVELLGTFANTVHLSGKLWLTSVLIGSVGLVIGAILKCIPVESGSDASDRHDGYRPIPTGPSA 1042          
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA5_ORYSJ (Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   28 FQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPE 225
            FQ    EFLG FASTVPL+W  WLL + +G++S+ + V++KCIPV   E      +GY  + +GP+
Sbjct:  951 FQVVIIEFLGTFASTVPLNWQHWLLSVGLGSISLIVGVILKCIPVGSGETSAT-PNGYRPLANGPD 1015          
BLAST of FC872510 vs. ExPASy Swiss-Prot
Match: ACA4_ORYSJ (Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   28 FQXXXXEFLGAFASTVPLSWHQWLLCILIGAVSMPIAVVIKCIPVKKSEPKIQHHDGYEEIPSGPE 225
            FQ    EFLG FASTVPL+W  WLL + +G++S+ + V++KCIPV   E      +GY  + +GP+
Sbjct:  973 FQVVIIEFLGTFASTVPLNWQHWLLSVGLGSISLIVGVILKCIPVGSGETSAT-PNGYRPLANGPD 1037          
The following BLAST results are available for this feature:
BLAST of FC872510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ACA11_ARATH1.834e-1864.71Putative calcium-transporting ATPase 11, plasma me... [more]
ACA4_ARATH3.458e-1757.97Calcium-transporting ATPase 4, plasma membrane-typ... [more]
ACA6_ORYSJ3.029e-1353.73Probable calcium-transporting ATPase 6, plasma mem... [more]
ACA3_ORYSJ3.703e-1146.27Calcium-transporting ATPase 3, plasma membrane-typ... [more]
ACA5_ORYSJ6.317e-1145.45Probable calcium-transporting ATPase 5, plasma mem... [more]
ACA4_ORYSJ6.317e-1145.45Probable calcium-transporting ATPase 4, plasma mem... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872510 ID=FC872510; Name=FC872510; organism=Citrus clementina; type=EST; length=601bp
GGGGAATATTAGTTTTAACAGTGGCTTTTTCAAATAATAATAATTGAGTT
CCTAGGAGCATTTGCAAGCACTGTGCCACTTAGCTGGCATCAATGGCTTC
TATGCATCTTAATCGGAGCAGTTAGCATGCCCATCGCAGTTGTCATAAAG
TGCATCCCGGTTAAAAAGTCTGAACCCAAAATTCAACACCATGATGGCTA
TGAAGAAATCCCTAGCGGTCCAGAGTCTGCTTAAAAGGTGGTCATAATTT
TTCAAAGCAATTGAAGGGCAATGTGGTGCACACAATTTGAGTGAAAGAAA
CTTCTTGCGAATAACCTTGAAGTGAAAGCAAGTGAAAGCACAATTAACAT
TGAAGTGAAAGCACAATTAGCTAGCGTTTGTTTTTTTATCTGAAATCGAT
TAGAGCTGAATTTAACTGAGGTTTGGATAGATGTACAGATGTTTGAATAA
CATCTTTGTTTTTTTTTTTTTTTCAGTTGAAATTAAAGTTGTATTTTTTT
TATTAAAAAAATCGTAAACATTGTTATTTGACATTTATATCTTTGTAAGT
GAAAAGAAAATAATTTAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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