FC872520

Overview
NameFC872520
Unique NameFC872520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872520_ssr35 microsatellite FC872520_ssr35:35..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9976 contig Ccv1_Contig9976:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 6.640e-75
Identity = 142/168 (84.52%), Postives = 144/168 (85.71%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKEI NGILWEVEGKWVVQGA DVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.116e-73
Identity = 134/168 (79.76%), Postives = 144/168 (85.71%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKEI NG+LWEVEGKWV+QGA +VDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.597e-71
Identity = 129/168 (76.79%), Postives = 140/168 (83.33%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKE+ENG++WEVEGKWVVQGA DVDIGANPS               KVVDIVDTFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.871e-69
Identity = 131/168 (77.98%), Postives = 140/168 (83.33%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSF YKEIENG+LWEVEGKWVV+GA DVDIGANPS               KVVDIVDTFRLQEQPAFDKK FVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.444e-69
Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPY+EIENGILWEV+GKWVVQGA DVDIGANPS               KVVDIVDTFRLQEQP FDKK FVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 7.110e-69
Identity = 127/168 (75.60%), Postives = 138/168 (82.14%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKE+ENG+LWEV+GKWVVQGA DV+IGANPS               +VVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLY+A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 2.702e-68
Identity = 127/168 (75.60%), Postives = 137/168 (81.55%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKEI+NG+LWEV+GKWVVQGA DV+IGANPS               KVVDIVDTFRLQEQPAFDKK FVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.751e-67
Identity = 126/168 (75.00%), Postives = 136/168 (80.95%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV  GA DV+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTFLY A  LKEVKC
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.692e-67
Identity = 130/170 (76.47%), Postives = 139/170 (81.76%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXX--KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            MLVYQDLL+GDELLSDSFPYKEI+NG+LWEV+GKWVVQGA DVDIGANPS                 KVVDIVDTFRLQEQP FDKK FVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of FC872520 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.936e-66
Identity = 126/168 (75.00%), Postives = 138/168 (82.14%), Query Frame = 1
Query:  112 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAADVDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 615
            M+VYQDLL+GDELLSDSFPYKE+ NG+LWEVEGKWVVQGA DVDIGANPS               KVVDIVDTFRLQEQP FDKK F+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPSAEGGDEEGVKIRLV-KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
The following BLAST results are available for this feature:
BLAST of FC872520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
TCTP_HEVBR6.640e-7584.52Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV8.116e-7379.76Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA7.597e-7176.79Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.871e-6977.98Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ5.444e-6977.38Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC7.110e-6975.60Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU2.702e-6875.60Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH1.751e-6775.00Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN8.692e-6776.47Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ1.936e-6675.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872520 ID=FC872520; Name=FC872520; organism=Citrus clementina; type=EST; length=847bp
GGGGCCCTCTCGCTCTCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTC
TCTCTCCAGTTTTCTCCGTTGATTGTTTTTCTTTTTTGTGTTCGCGAGAG
AGACTGCAATCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTT
CTCTCCGACTCTTTTCCCTACAAGGAAATTGAGAATGGGATTCTGTGGGA
AGTTGAGGGAAAGTGGGTTGTACAAGGAGCCGCTGATGTTGACATTGGTG
CAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGGGTGTTGATGACCAA
GCCGTGAAGGTGGTCGACATTGTCGACACATTCAGGCTACAGGAGCAACC
CGCTTTTGACAAGAAGCCGTTTGTAACATACATGAAGAGATTCATCAAGT
TGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGATATTTAAGAAGAAT
ATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTCAGTGACCTTCAATT
CTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCTTGTCTTTGCTTACT
ACAAGGAAGGTGCGACCGACCCAACATTTTTGTATATGGCTGATGCATTG
AAGGAGGTGAAGTGCTAAGCTGGGCTTCGAAGAGGAAGTGCCTGCTGTAG
TTCTAATTTTAATTATTGCCCGCGGTTATTTTTATGTATCTTTTGTGCTG
GTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTTTTATTTTGTCATAA
ACAATATGTTTTTCTGCTCTTAATTATTGGGTTTTATGGTTTGAGATTGA
ATTACCAAATAACTTAATAGTTTTTGCAAAAAAAAAAAAAAAAAAAA
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