FC872523 | Citrus Genome Database

Overview


Name	FC872523
Unique Name	FC872523
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	511

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10414	contig	Ccv1_Contig10414:640..1148.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.148e-32
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 356
            KETQEMIDFAA+HNI ADIEVIP DY+NTAMERL KADVRYRFVID+ NT+K
Sbjct:  305 KETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTLK 356

HSP 2 Score: 47.7506 bits (112), Expect = 3.148e-32
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            L S GKLV++GAPEK LELP FPLL GRK
Sbjct:  266 LNSHGKLVMVGAPEKPLELPVFPLLMGRK 294

HSP 3 Score: 36.965 bits (84), Expect = 3.148e-32
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLV 84
            DGIIDTVSA HPL+PL GL+
Sbjct:  247 DGIIDTVSAQHPLLPLIGLL 266

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.419e-31
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 359
            KETQEM+DFAAKHNI AD+EVIP DYVNTAMERL K+DVRYRFVID+ANTM++
Sbjct:  307 KETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTMRT 359

HSP 2 Score: 44.669 bits (104), Expect = 9.419e-31
Identity = 21/31 (67.74%), Postives = 23/31 (74.19%), Query Frame = 2

Query:   77 DWLKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            D LK  GKLV++GAPEK  ELP F LL GRK
Sbjct:  266 DLLKPNGKLVMVGAPEKPFELPVFSLLKGRK 296

HSP 3 Score: 33.113 bits (74), Expect = 9.419e-31
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 1

Query:   13 RAQ*DGIIDTVSAVHPLMPLFGLVEISRK 99
            R+  DGIIDTV   HPL PLF L++ + K
Sbjct:  245 RSSLDGIIDTVPVNHPLAPLFDLLKPNGK 273

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.621e-30
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 365
            KETQEMID A KHNI ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct:  303 KETQEMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357

HSP 2 Score: 41.5874 bits (96), Expect = 7.621e-30
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK +GKLV++GAPEK LELP  PL+  RK
Sbjct:  264 LKHKGKLVMVGAPEKPLELPVMPLIFERK 292

HSP 3 Score: 35.039 bits (79), Expect = 7.621e-30
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVE 87
            DGIIDTVSA H L+PL GL++
Sbjct:  245 DGIIDTVSATHSLLPLLGLLK 265

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.166e-29
Identity = 41/54 (75.93%), Postives = 49/54 (90.74%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 362
            KETQEMIDF+ KHN++ +IEV+P DYVN AM+RLAKADV+YRFVIDVANT+K T
Sbjct:  309 KETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362

HSP 2 Score: 45.8246 bits (107), Expect = 2.166e-29
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LKS GKLVL+GA EK LELP FPL+ GRK
Sbjct:  270 LKSHGKLVLIGAIEKPLELPPFPLILGRK 298

HSP 3 Score: 32.7278 bits (73), Expect = 2.166e-29
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVE 87
            DGIIDTVSA H ++PL GL++
Sbjct:  251 DGIIDTVSADHSIVPLIGLLK 271

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.194e-27
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 359
            KETQEMIDFAAKH+I++DIEV+P DYVNTAMERL K DVRYRFVIDVANT+K+
Sbjct:  308 KETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360

HSP 2 Score: 47.7506 bits (112), Expect = 2.194e-27
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LKSQGK++++G P+K LELP FPLL GRK
Sbjct:  269 LKSQGKMIMVGVPDKPLELPVFPLLQGRK 297

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.196e-27
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 359
            KETQEM+DFAA+HNI AD+EVIP DYVNTAMERL K+DVRYRFVIDVANT+K+
Sbjct:  284 KETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTIKT 336

HSP 2 Score: 47.3654 bits (111), Expect = 2.196e-27
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKLV++GAPEK LELP FPLL GRK
Sbjct:  245 LKVNGKLVMVGAPEKPLELPVFPLLMGRK 273

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.718e-27
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 365
            KETQEM+D A KHNI ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct:  303 KETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

HSP 2 Score: 43.8986 bits (102), Expect = 3.718e-27
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK++GKLV++GAP + LELP FPL+ GRK
Sbjct:  264 LKNKGKLVMVGAPAEPLELPVFPLIFGRK 292

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.914e-26
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 362
            +ETQEMIDFAA+H I+A+IE+I  DYVNTAM+RLAK DVRYRFVID++NT+ +T
Sbjct:  308 QETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAAT 361

HSP 2 Score: 39.6614 bits (91), Expect = 1.914e-26
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LKS GKLVLLGA EK  ++ AF L+ GRK
Sbjct:  269 LKSNGKLVLLGATEKPFDISAFSLILGRK 297

HSP 3 Score: 33.113 bits (74), Expect = 1.914e-26
Identity = 15/25 (60.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            DGIIDTVSA H + PL GL++ + K
Sbjct:  250 DGIIDTVSASHSISPLIGLLKSNGK 274

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.915e-26
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 3

Query:  201 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 356
            KETQEMIDFAAK+NI AD+EVIP DY+NTAM+RL K+DV+YRFVIDV  ++K
Sbjct:  307 KETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSLK 358

HSP 2 Score: 40.817 bits (94), Expect = 1.915e-26
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GKL+++G P+K L+LP FPL+ GR+
Sbjct:  268 LKPHGKLIVVGLPDKPLQLPVFPLIQGRR 296

HSP 3 Score: 33.8834 bits (76), Expect = 1.915e-26
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVE 87
            DGIIDTVSA HP++PL  L++
Sbjct:  249 DGIIDTVSAPHPIVPLLSLLK 269

[Close]

BLAST of FC872523 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 7.951e-23
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 3

Query:  213 EMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 356
            EMID AAKH + A+IEVI ADYVNTAMERLAKADVRYRFVID+ NT+K
Sbjct:  303 EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTLK 350

HSP 2 Score: 35.4242 bits (80), Expect = 7.951e-23
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 2

Query:   83 LKSQGKLVLLGAPEKSLELPAFPLLTGRK 169
            LK  GK++L+G PEK +E+P F L+   K
Sbjct:  261 LKPNGKMILVGLPEKPMEIPPFALVASNK 289

HSP 3 Score: 29.261 bits (64), Expect = 7.951e-23
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1

Query:   25 DGIIDTVSAVHPLMPLFGLVEISRK 99
            DGII+TVSA  P+ PL GL++ + K
Sbjct:  242 DGIINTVSANIPIAPLLGLLKPNGK 266

The following BLAST results are available for this feature:

BLAST of FC872523 vs. ExPASy Swiss-Prot

BLAST of FC872523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42


Match Name	E-value	Identity	Description
MTDH_FRAAN	3.148e-32	84.62	Probable mannitol dehydrogenase OS=Fragaria ananas...	[more]
MTDH_APIGR	9.419e-31	83.02	Mannitol dehydrogenase OS=Apium graveolens GN=MTD ...	[more]
CADH8_ARATH	7.621e-30	83.64	Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th...	[more]
MTDH3_STYHU	2.166e-29	75.93	Probable mannitol dehydrogenase 3 OS=Stylosanthes ...	[more]
MTDH_MESCR	2.194e-27	83.02	Probable mannitol dehydrogenase OS=Mesembryanthemu...	[more]
MTDH_PETCR	2.196e-27	83.02	Mannitol dehydrogenase (Fragment) OS=Petroselinum ...	[more]
CADH7_ARATH	3.718e-27	85.45	Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th...	[more]
CADH6_ARATH	1.914e-26	72.22	Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi...	[more]
GEDH1_OCIBA	1.915e-26	75.00	Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE...	[more]
CADH5_ORYSJ	7.951e-23	81.25	Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAB3AH10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AH10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872523 ID=FC872523; Name=FC872523; organism=Citrus clementina; type=EST; length=511bp
CAGGCTTGCCATAGGGCACAATAGGATGGTATCATCGATACAGTATCTGC
AGTTCACCCGCTAATGCCGTTGTTCGGACTGGTTGAAATCTCAAGGAAAG
CTAGTACTTCTTGGTGCACCCGAGAAGTCACTAGAGCTACCAGCTTTCCC
CCTGCTCACGGGGAGGAAGTATAGTTGGTGGCAGTCTCATTGGGGGGTTG
AAGGAGACTCAAGAGATGATTGATTTTGCAGCAAAACACAACATCAGAGC
TGATATTGAGGTCATACCGGCCGACTATGTGAACACAGCCATGGAGCGCC
TTGCTAAAGCCGATGTTAGATATCGCTTTGTCATCGACGTTGCAAACACA
ATGAAGTCCACTCCTTAAATTTTCTCCCTTTTGAGTTGCGCTTAAAACGA
GGAATGTGCGTTTATTGTTGAGTCACAACATCGTCTAAGTTTTAGATTAT
GTTAGTCTTTTGTTGTGATTTCAAAACTGTTTTTACTTTTTAAGAATAAT
AATTTCGTGAC