FC872544

Overview
NameFC872544
Unique NameFC872544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9984 contig Ccv1_Contig9984:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN6_ARATH (Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = 2
Query:    5 YLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIATFNSLCSTKCKWGCKKK--TPLEEFLYHDDL 355
            YL MPVLFTEFGVSA D G+NTSFRD ++++VYK  LNST+KGG+GAGSL+WQ+FP G ++M+DGYA+ L+++ + S IISL S R+A FNSLCS +C+WGCKKK  T L+  L HD+L
Sbjct:  330 YLGMPVLFTEFGVSAHDPGFNTSFRDMMLNTVYKMTLNSTRKGGAGAGSLVWQVFPQGAEFMDDGYAVYLTRAHTASKIISLQSKRLAIFNSLCSWRCRWGCKKKNQTALDALLSHDEL 448          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN5_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 5 OS=Oryza sativa subsp. japonica GN=MAN5 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.589e-29
Identity = 55/104 (52.88%), Postives = 78/104 (75.00%), Query Frame = 2
Query:   14 MPVLFTEFGVSAKDT--GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIATFNSLCSTKCKWGCKKK 319
            MPVLF EFGVS +     +N + RD  I +VY  +L ST++GG GAG+LLWQ+FP+GTDYM+DGYA+VL ++ +T+ I++ HS R+ +FNS C+  C+WGC K+
Sbjct:  366 MPVLFAEFGVSTRGARAAFNATSRDAFIEAVYGAMLRSTRRGGGGAGALLWQVFPEGTDYMDDGYAVVLPRAAATAGIVAAHSRRLQSFNSRCAWSCRWGCNKR 469          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN8_ORYSJ (Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa subsp. japonica GN=MAN8 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLH 253
            L MP++  EFGVS KD  +   FR+  + +VY+  L+S K+G  G G LLWQLFP+G ++M+DGYA++ +KSPST ++++ H
Sbjct:  285 LGMPIVVGEFGVSVKDGKFGNEFREDFMKTVYRIFLSSWKEGVIGGGCLLWQLFPEGAEHMDDGYAVIFAKSPSTLSLLANH 366          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN7_ORYSJ (Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa subsp. japonica GN=MAN7 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 38/82 (46.34%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLH 253
            L MP++  EFGVS KD  +   FR+  + ++Y+  L+S K+G  G G LLWQLFP+G ++M+DGYA++ +KSPST ++++ H
Sbjct:  292 LGMPIVVGEFGVSVKDGKFGNEFREDFMKTIYRIFLSSWKEGVIGGGCLLWQLFPEGAEHMDDGYAVIFAKSPSTLSLLANH 373          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN5_SOLLC (Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHS 256
            L+ P++  EFG S++D GYN + RDT +S++Y+ + +  K GG+  GSL+WQL   G +   DGY I L K+PST+ II+  S
Sbjct:  320 LKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQS 402          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN2_SOLLC (Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lycopersicum GN=MAN2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.248e-15
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHS 256
            L+ P++  EFG S++D GYN + RDT +S++Y+ + +  K GG+  GSL+WQL   G +   DGY I L K+PST+ II+  S
Sbjct:  320 LKKPLVLAEFGKSSRDPGYNQNIRDTFMSTIYRNIYSLAKDGGTMGGSLIWQLVAQGMENYEDGYCIELGKNPSTAGIITSQS 402          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN7_ARATH (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIATFNSL 283
            L  P++  EFG S K  GY  + RD + ++VY  +  S K+GG+ AG L WQL  +G D   DGY I+LS+S ST N+IS  S ++     +
Sbjct:  312 LHKPIILAEFGKSMKKPGYTPAQRDIVFNTVYSKIYGSAKRGGAAAGGLFWQLLVNGIDNFQDGYGIILSQSSSTVNVISQQSRKLTLIRKI 403          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN1_ORYSJ (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRI 265
            LR P+L  EFG S KD GY++  RD L  +VY  +  S ++GG+  G L WQL   G D   DGY +V  ++PST+ +I+ +S R+
Sbjct:  321 LRKPLLIAEFGKSWKDPGYSSGQRDALYGTVYAKIYESARRGGATVGGLFWQLLVPGMDSYRDGYEVVFGETPSTTGVITTNSRRL 406          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN4_SOLLC (Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIA 268
            L+ P+L  EFG S K  GY  + RD     +Y T+ N  K GG   G L WQ+   G    +DGY +VL +SPSTS +I L S R++
Sbjct:  310 LKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLS 396          
BLAST of FC872544 vs. ExPASy Swiss-Prot
Match: MAN9_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 9 OS=Oryza sativa subsp. japonica GN=MAN9 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 2
Query:    8 LRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSNIISLHSTRIA 268
            LR P+L TEFG SA+  GY  + RD    +VY  +  S ++GG+ AG L WQ+   G +   DGY +VL +S ST+++++    RIA
Sbjct:  316 LRKPLLVTEFGWSARSNGYTVAARDAYFRTVYDAVYASAREGGACAGGLFWQVMAPGMESWTDGYEVVLERSKSTADVVAHQCARIA 402          
The following BLAST results are available for this feature:
BLAST of FC872544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MAN6_ARATH1.239e-3963.03Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis ... [more]
MAN5_ORYSJ2.589e-2952.88Putative mannan endo-1,4-beta-mannosidase 5 OS=Ory... [more]
MAN8_ORYSJ7.814e-1847.56Mannan endo-1,4-beta-mannosidase 8 OS=Oryza sativa... [more]
MAN7_ORYSJ1.021e-1746.34Mannan endo-1,4-beta-mannosidase 7 OS=Oryza sativa... [more]
MAN5_SOLLC1.248e-1544.58Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lyco... [more]
MAN2_SOLLC1.248e-1544.58Mannan endo-1,4-beta-mannosidase 2 OS=Solanum lyco... [more]
MAN7_ARATH1.629e-1541.30Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis ... [more]
MAN1_ORYSJ6.192e-1543.02Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa... [more]
MAN4_SOLLC1.379e-1442.53Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lyco... [more]
MAN9_ORYSJ8.941e-1441.38Putative mannan endo-1,4-beta-mannosidase 9 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CC03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872544 ID=FC872544; Name=FC872544; organism=Citrus clementina; type=EST; length=741bp
GGGATATCTCAGAATGCCAGTTCTATTTACTGAGTTCGGCGTATCTGCAA
AAGACACCGGTTATAACACATCATTCCGAGACACACTGATTAGCTCAGTA
TACAAAACTCTCTTGAACTCAACGAAGAAAGGAGGCAGCGGAGCCGGCAG
CCTCTTGTGGCAGCTCTTCCCTGATGGAACAGACTACATGAATGATGGGT
ATGCAATTGTTCTTTCGAAATCTCCTTCAACTTCAAACATCATTTCCCTT
CATTCCACAAGAATCGCAACCTTCAACTCCTTGTGTTCTACAAAATGTAA
ATGGGGTTGCAAGAAGAAAACTCCTCTGGAGGAATTCCTTTACCACGATG
ATCTGTAAATTTACACATGAATCTTATCATGGATGTTAAAACAATGCTAT
TGAGAAATGAAGTATGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTG
GGGGCCCCCCCCGGCCCCGAAAACTTAAAACCCAAAAAATTTTTTGGGGG
GGGCCCAAATTTGGCCCCTTTGGGCAAATTCCCCCAAAAGGGGGGGAAAA
AAAAATTCCGGGGGCCCTTTTTTAAACCCTCGGGGGGGGAAAAACCCGGG
GGTTCCCCAATTATACCCCTTTGGAACACCCCCCCCTTTCC
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