FC872558

Overview
NameFC872558
Unique NameFC872558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11452 contig Ccv1_Contig11452:468..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.773e-76
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  135 TNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.024e-76
Identity = 134/150 (89.33%), Postives = 143/150 (95.33%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:   85 TNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 3.950e-76
Identity = 135/150 (90.00%), Postives = 144/150 (96.00%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  137 TNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.960e-75
Identity = 133/150 (88.67%), Postives = 142/150 (94.67%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  141 TNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.729e-75
Identity = 129/151 (85.43%), Postives = 143/151 (94.70%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 458
            TNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  159 TNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.076e-73
Identity = 128/150 (85.33%), Postives = 139/150 (92.67%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:   84 TNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.972e-73
Identity = 127/150 (84.67%), Postives = 140/150 (93.33%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  138 TNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.584e-43
Identity = 82/150 (54.67%), Postives = 114/150 (76.00%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  + YV++E+LKELL+KA  GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + IH++
Sbjct:   82 TNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.519e-43
Identity = 81/150 (54.00%), Postives = 114/150 (76.00%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:   82 TNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of FC872558 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.675e-42
Identity = 81/150 (54.00%), Postives = 114/150 (76.00%), Query Frame = 3
Query:    6 TNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 455
            TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:   82 TNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227          
The following BLAST results are available for this feature:
BLAST of FC872558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI2_ARATH1.773e-7690.00Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CAMAC3.024e-7689.33Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLABR3.950e-7690.00Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.960e-7588.67Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC9.729e-7585.43Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_ARATH1.076e-7385.33Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_CLABR6.972e-7384.67Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_MACFA2.584e-4354.67Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_PONAB7.519e-4354.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_HUMAN1.675e-4254.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872558 ID=FC872558; Name=FC872558; organism=Citrus clementina; type=EST; length=775bp
GGGGGACTAACACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGAGCTT
ATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCACAAAGAAAGCTTTT
GGATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTCACTC
CACTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGGGGAG
CATGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTAACCC
AAATCCTGATGAAGTAGCCGAGTATAAATATGTCAACCGGGAACAGTTAA
AAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCTGTCT
CCTTGGTTCAGACTGGTTGTGGACAATTTCTTGTTCAAGTGGTGGGATCA
CCTCGAAAAAGGTACCCTTAACGAAGTCATTGACATGAAGACCATTCACA
AGTTGACTTAATAAAGCCGCAGGCCCTTGAAACACAGTATTTGTGTGCCG
GAACCTGTATTCCAATAAGTTTGGGCATTTGAGAGTTCTTCAAGACATTA
AGGGTACACAGTATCTTCTCACCGGTTTCTTTATTCCAATAAATTTGGAT
ATGCGAGAGTTCTACACAGATTAGCATTTTGTTGTTGACGTTACCTTATC
TTTTCGTATGTGCTGCTTTTATGGAATTTTATTGTTAAGTTTGTAATTTT
GACATTACATATGGTTTAGTAAAAAAATAAAAATCTGCTTCTTCTATAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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