FC872579

Overview
NameFC872579
Unique NameFC872579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14116 contig Ccv1_Contig14116:152..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 81/270 (30.00%), Postives = 119/270 (44.07%), Query Frame = 1
Query:   13 MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKTGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDV--DLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVK--VVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 768
            + F+ L  + L   +SS       +SF+F +F  D  D   LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +T       G  LGL S        L    AVE DT +N N                + N + S   V    ++G     +I YN D  +LSV ++Y      +   V   ++L   +P  V VGF+ +TG ++++H +++WTFNS
Sbjct:   20 LAFITLFLMLLNRVNSS-----DSLSFTFDNFRPDQRD---LILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272          
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC2_CYTSC (2-acetamido-2-deoxy-D-galactose-binding seed lectin 2 OS=Cytisus scoparius PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.265e-12
Identity = 71/245 (28.98%), Postives = 103/245 (42.04%), Query Frame = 1
Query:   85 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPIRKVGRVLYGKPLSL-------QRSFIDTTITIKISRHQNYTDRAGDGMTFIFASDKTGPSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSVYAAY-SGETLVK---VVEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 768
            +SFSF  F  D   N  L     I  +G L +T           +GR LY  P+ +       + SF  T  +  IS   N +  A DG+ F  A   T P +   G YLGL    SS       +AVE DT  N                  +S  V+S      K+G    V I Y P    L     Y SG+T  K   ++   ++L   +P  V +GF+A TG   +++E+H++++W+F S
Sbjct:    4 LSFSFTKFKTDQ-KNLILQRDALITPTGKLQLTTVENGKPAAYSLGRALYSTPIHIWDKSTGDEASFA-TFFSFVISDAPNPSTAATDGLAFFLAPADTQPQS--AGGYLGLFEKDSSYNSSNQIVAVEFDTYYNSAWDPQTNPHIGIDVNTIKSKKVSSW---GFKNGNVATVLITYQPSSKSLVASLVYPSGQTSDKTSYIISANVDLKATVPEWVRIGFSATTGQTDNYIETHDILSWSFKS 241          
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC_ERYCG (Lectin OS=Erythrina crista-galli PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 70/241 (29.05%), Postives = 103/241 (42.74%), Query Frame = 1
Query:   85 ISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIK----ISRHQNYT-DRAGDGMTFIFASDKTGPSAKGVGEYLGL--QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLD--VDLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNS 768
            ISFSF  F   + DN TL     I  SG L +T      +P     GR LY KP+ +  S   T  + +     S  Q YT     DG+ F     K+ P A+G G YLG+   S   + +  LAVE DT  N                  + N + S+      L +G+   V I Y+     L V   Y     +  + + +++  ++P  V VG + ATG   D  E+H+V +W+F +
Sbjct:    4 ISFSFSEFEPGN-DNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYTKPVHMWDSTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-AQGYG-YLGVFNNSKQDNSYQTLAVEFDTFSNP------WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWVDVGLSGATGAQRDAAETHDVYSWSFQA 235          
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC_BOWMI (Lectin OS=Bowringia mildbraedii PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 70/240 (29.17%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   85 ISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSF-----IDTTITIKISRHQNYTDRAGDGMTFIFASDKTG-PSAKGVGEYLGL---QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVDLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 768
            + F+F  F     D   LI  G  ++ S+ AL +T       P    VGR LY  P+ L +S       +TT T  IS+  +    A   +TF  AS  T  PS  G G  LGL    ++ G     +AVE DT  N ++                S   +     D ++G+     I YN    +LSV ++Y   + V VV   + L+++ P  V VGF+A TG + +++ ++ W+F S
Sbjct:    4 VCFTFTDFESGQQD---LIFQGDASVGSNKALQLTKVDSKGNPQGGSVGRALYTAPIRLWQSSSLVASFETTFTFSISQGSSTPAAA---LTFFIASPDTKIPSGSG-GRLLGLFGSSNNAGSDNGVVAVEFDTYPNTDIGDPNYRHIGIDVNSIRSKAASKW---DWQNGKTATAHISYNSASKRLSVVSSYPNSSPV-VVSFDVELNNVGPPDVRVGFSATTGQYTQTNNILAWSFRS 232          
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC_ERYCO (Lectin OS=Erythrina corallodendron PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 76/277 (27.44%), Postives = 115/277 (41.52%), Query Frame = 1
Query:   10 KMIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYGAIESSGALSITPGPPPNLPI-RKVGRVLYGKPLSLQRSFIDTTITIK----ISRHQNYT-DRAGDGMTFIFASDKTGPSAKGVGEYLGL--QSSPGDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLD--VDLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATG---DFLESHEVINWTFNSFPVPPSLKEKN 801
            K+  +L LS+ L     + ++    ISFSF  F   + DN TL     I  SG L +T      +P     GR LY KP+ +      T  + +     S  Q YT     DG+ F     K+ P A+G G YLG+   S   + +  L VE DT  N                  + N + S+      L +G+   V I Y+     L     Y     +  + + +++  ++P  V VG + ATG   D  E+H+V +W+F +     SL E N
Sbjct:    5 KLCSVLALSLTLFLLILNKVNSVETISFSFSEFEPGN-DNLTLQGAALITQSGVLQLTKINQNGMPAWDSTGRTLYAKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKP-AQGYG-YLGIFNNSKQDNSYQTLGVEFDTFSNP------WDPPQVPHIGIDVNSIRSIKTQPFQLDNGQVANVVIKYDASSKILHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQRDAAETHDVYSWSFQA-----SLPETN 267          
BLAST of FC872579 vs. ExPASy Swiss-Prot
Match: LEC1_MEDTR (Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 68/264 (25.76%), Postives = 111/264 (42.05%), Query Frame = 1
Query:   13 MIFLLLLSVFLRGASSSILSEDTPISFSFPSFAKDSCDNKTLICYG--AIESSGALSITPGPPPNLPIRKVGRVLYGKPLSLQRSF------IDTTITIKISRHQNYTDRAGDGMTFIFASDKTGPSAKGVGEYLGLQSSP--GDKFPPLAVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDVD--LKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVKVVEKPINLSDIIPTPVYVGFTAATGDFLESHEVINWTFNS 768
            +I  + L+VF+   + + ++     SF+   F++D    K LI  G     S+G L +T           +GR LY  P+ +  S        +T  T  I+    Y+    DG+ F  A   T P   G   +LG+ +S         +AVE+DT  N                    N + S+      L++GR   V + ++     LSV  +Y G     ++   + L DI+P  V +GF+AATG     H++  W+F+S
Sbjct:   10 VILSISLTVFILLFNINKVNSTELTSFTITKFSQDQ---KNLIFQGNAITTSTGKLQLTKAVK-----NSIGRALYSAPIHIWDSKTGDVANFETLFTFAITAP--YSSNVADGLAFFIAPVDTQPQNIGRAGFLGVFNSETYNKSIQTVAVEIDTFHNT------WDPKINRHIGINVNCIKSISTTSWVLENGREANVLVRFDAHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAEHDIRYWSFHS 257          
The following BLAST results are available for this feature:
BLAST of FC872579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LEC2_CLALU6.694e-1430.00Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
LEC2_CYTSC6.265e-1228.982-acetamido-2-deoxy-D-galactose-binding seed lecti... [more]
LEC_ERYCG1.823e-1129.05Lectin OS=Erythrina crista-galli PE=1 SV=1[more]
LEC_BOWMI5.304e-1129.17Lectin OS=Bowringia mildbraedii PE=1 SV=1[more]
LEC_ERYCO9.047e-1127.44Lectin OS=Erythrina corallodendron PE=1 SV=3[more]
LEC1_MEDTR9.047e-1125.76Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CE07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872579 ID=FC872579; Name=FC872579; organism=Citrus clementina; type=EST; length=858bp
GGGGGAAAAAAAATGATTTTCCTACTACTCCTCTCCGTTTTTCTTCGCGG
AGCTTCTTCATCAATCCTTTCCGAAGACACACCTATTAGCTTCTCATTTC
CCTCATTCGCCAAAGACAGTTGTGACAATAAGACCCTCATTTGCTACGGA
GCGATTGAAAGTTCCGGCGCCTTAAGCATCACACCAGGCCCTCCACCAAA
CCTGCCGATCAGAAAGGTTGGACGGGTTTTATACGGCAAGCCTCTGAGTT
TACAGCGATCTTTTATTGATACCACCATCACCATTAAGATCTCACGCCAT
CAGAATTACACTGATCGTGCCGGAGATGGCATGACGTTCATTTTTGCAAG
CGATAAAACCGGTCCATCAGCAAAGGGCGTCGGCGAATATCTTGGACTGC
AGTCTTCACCAGGCGATAAATTTCCTCCATTAGCCGTGGAGCTGGACACA
TGCCTGAACAAGAACCTGAATGATCCAGATGATAACCATATTGGCATCGA
CATAAACGGAATCGAATCAAATCCAGTTAATAGTCTGCTTGACGTTGATC
TCAAAAGTGGACGAGCAATCCAGGTTCGAATTTATTACAATCCAGACTTT
GGACAACTCTCTGTTTATGCGGCATATTCGGGGGAAACACTTGTGAAGGT
GGTTGAAAAACCCATTAACCTGTCAGATATAATTCCAACGCCCGTCTATG
TTGGATTCACAGCAGCTACGGGGGACTTTTTAGAAAGCCATGAGGTTATA
AATTGGACCTTCAACTCGTTCCCAGTGCCGCCTTCTCTCAAGGAGAAAAA
CCTGGTGATGCCAATATAATTCTAAACCCGTCTTTGAAAAAACATGTCAC
ATAAATTA
back to top