FC872583

Overview
NameFC872583
Unique NameFC872583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length965
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9997 contig Ccv1_Contig9997:1..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872583 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.150e-28
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 2 
Query:  107 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 544
            MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S   +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS +   FLA
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of FC872583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.150e-2841.89Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CE12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872583 ID=FC872583; Name=FC872583; organism=Citrus clementina; type=EST; length=965bp
GGGGGCTGTTAAAACTGCTTGACATTTTTCCATCGAGCGCACGCATCAAA
ACTTTTTGTCTTTCTTTTTATCGTGGCCAGTGAAGAACGATCGTGAGGGA
GAGAAAATGCTGGCAGTGTTTGACAAATCGGTGGCCAAAGCCCCAGAGGC
TCTGCAGAGTCCACAGACCGAGTCTGCTTGCGCGCTGAAGAATGGTCTAT
TGGCTAACCACTTTAGCTCTGTTCACCCTGGCTCTGTCACTGTGAATCTT
GGCTCTTCTGGCGTCATTGCTTACTCCCTTAACAGGCAAAATCCTCTTTT
GCCAAGATTATTTGCGGTTGTGGATGACATTTTCTGCTTGTTCCAAGGCC
ACATTGAGAACGTTGCTCTGCTTAAGCAGCAATATGGACTAAACAAAACA
GCAAATGAGGTCATCATTGTCATTGAGGCTTACAGAACTCTCAGGGATCG
AGGTCCTTATCCTGCCGATCAGGTTGTCAGAGACATTCAAGGGAAGTTTG
CGTTTATTCTCTATGACAGCTCTTCGAAAAACGCATTCTTAGCTTCTGAT
GCTGATGGGAGTGTTCCCTTCTTCTGGGGTACTGATTCTGAAGGCCATCT
TGTTCTTTCCGATGATGTAGAGATTGTGAAGAAGGGCTGTGGGAAGTCTT
TTGCACCATTCCCTAAAGCATGCTTCTTTACATCTTCTGGTGGATTGAGG
AGCTTCGAGCACCCCATGAATGAGCTGAAGCCTGTGCCAAGGGTAGATAG
TTCAGGTCAGGTTTGTGGTTCAACTTTCAAGGTGGATGCTGAGACTAAGA
AAGAAACCGGCATGCCAAGAGTTGGGAGTGCTGCCAACTGGTCCACAAAC
CTCTAAGTTCATAACTACAACTTTCCGGGGAGGGTTTTATTTTATATGGG
CCTTCCGAGGGTTTATTTCATCACTTTTGCAGTTCCCGTTACCATCATAT
GACTTATATGCTTTA
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