FC872599 | Citrus Genome Database

Overview


Name	FC872599
Unique Name	FC872599
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	966

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC872599_ssr377	microsatellite	FC872599_ssr377:377..394.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC872599_ssr297	microsatellite	FC872599_ssr297:297..317.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC872599_ssr803	microsatellite	FC872599_ssr803:803..814.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10004	contig	Ccv1_Contig10004:1..966.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FC872599 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 9.495e-15
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 1

Query:  538 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHCMNIESENSVLRAQLGELTHRLHSLNEII 777
            R+ KR +SNRESARRSR+RKQ+HLD+L+ +VA+L+ DN ++             +E EN+VLRA+  EL  RL S+NE++
Sbjct:   26 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105

The following BLAST results are available for this feature:

BLAST of FC872599 vs. ExPASy Swiss-Prot

BLAST of FC872599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
OCS1_MAIZE	9.495e-15	48.75	Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P...	[more]

Properties


Property Name	Value
Genbank description	KN0AAB1CF07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CF07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872599 ID=FC872599; Name=FC872599; organism=Citrus clementina; type=EST; length=966bp
GGGGGGTGTTGGGTTTGTGTTCTTGAGCAAAAGTTTCAAATCCCAAAACA
CAAATCGCAGTTGGTTTTTTTGGGGAAGAACTAATGCTCAGTATATTGTT
CTTGATGTTTGAGATTCATGTCTCCAATTCTTGAACTTCTTTTTTCTGAG
TGTATGATATATTCCACATTCAGGCGCAGGACCCAGCTTGTTCAATCTTT
CTCAGTTGTTTTCCTCTACTGGCTCTATTATGTTTCATGATTAATTTTTA
GCTTCATTTTTCAGTTATTAATAGTTAATTAGCCAATAAATCTGTAATCA
TCATCATCATCATCATCATTATTATCATCTGCATAATAAAATTTTCGGTT
TTGATTTCATCTGGGTCCTGCAAAAATCTCTCTCTCTCTCTCTCAGTTTC
CTCTTATTGGAAAAGGGAAAAAAAGAATTGCAGTAATTTAAATGGCTTCT
TCAAGTGGGACATCATCAGGAGGATCGTCATCATTGATGTTGCAAAACTC
AGGGTCTGAGGAGAGTTTACAAGCATTGATGGATCAAAGGAAGAGGAAGA
GGATGATATCGAACAGAGAATCAGCTAGAAGATCGAGGATGAGGAAGCAG
AAGCATTTGGATGATCTGATGGCTCAGGTTGCTCAGCTGAGGAAAGATAA
TCACCAGATCATCACCAGCATCAACATCGCGACGCAACATTGCATGAACA
TTGAGTCTGAGAACTCAGTGTTGAGGGCCCAACTTGGTGAGCTCACTCAC
AGGCTGCACTCGCTCAATGAAATCATCAGCTTCTTGGATGCCAGCAACAA
CAACGACGACGACGAAAACAATGGCGGTGCTGCCGCTGCTATCTTTGAAG
CCACAAGCATGATCAACGAGCCTGCTTTTCGATATTTCATGAACCCACTG
AATTTGTCATATCTGAATCAGCCTATCATGGCTTCTGCAAACATGTTTCA
TCAGTACTGATGCTGA