FC872602

Overview
NameFC872602
Unique NameFC872602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872602_ssr448 microsatellite FC872602_ssr448:448..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10005 contig Ccv1_Contig10005:1..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.355e-56
Identity = 108/120 (90.00%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:   58 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVFKFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRK++KERKNR KKIR
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.163e-54
Identity = 103/120 (85.83%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:   58 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF FKFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRK++KERKNR KKIR
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.173e-38
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.841e-38
Identity = 78/115 (67.83%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:   73 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKKIR 417
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRK+ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of FC872602 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.078e-37
Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:   58 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKRMKERKNRQKK 411
            M   A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRK+ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118
The following BLAST results are available for this feature:
BLAST of FC872602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH1.355e-5690.0040S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH2.163e-5485.8340S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT2.173e-3868.7040S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB2.173e-3868.7040S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE2.173e-3868.7040S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU2.173e-3868.7040S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN2.173e-3868.7040S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN2.173e-3868.7040S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA4.841e-3867.8340S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_DICDI1.078e-3763.5640S ribosomal protein S24 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CF10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872602 ID=FC872602; Name=FC872602; organism=Citrus clementina; type=EST; length=830bp
GGGGGGACACTTGAGACTTGCTTTGCATTGCAGTGCAATTGATTCATTGA
GACATAAATGGCTGACAAGGCGATCACCATCCGAACCAGAAAGTTCATGA
CCAACAGGCTTCTGTCGAGGAAACAATTTGTTATCGATGTTCTGCATCCA
GGTCGAGCCAATGTTTCAAAGGCCGAGTTGAAGGAGAAATTGGCGAGGAT
GTATGATGTGAGGGATGCGAATGCTATATTTGTGTTCAAATTTCGTACAC
ATTTTGGAGGTGGGAAATCAACTGGGTTTGGCCTCATCTATGACTCTGTT
GAGAGTGCAAAGAAGTTTGAGCCCAAGTACAGGCTAATCAGGAATGGACT
GGCTACCAAGGTTGAGAAGTCAAGGAAGCGGATGAAAGAGAGGAAAAACA
GGCAAAAGAAGATCAGAGGTGTCAAGAAGGCCAAGGCTGAAGCTGGCAAG
AAGAAGAAGTGAGGCCTTGGGGCGTTTAACCTGGCTTCTTCCAACAGCAC
GAATAGTTCCTTCGCTCTTTCTTTTAGTTATTAAATAACTAGCGAGTGGC
TTAGCTCTTTTGTATTTCTATGAGACATTATTATATTTGATGTTTGCTAT
AATATTAGTACCTGGAGGGAAAATGTTTCTTAGTGAAATAAAGAGGTACT
TTCTCTGAGTCTATTGGTGCTTTTGGAATAAAATTGTCAAAGCGGTTGAT
AACTAGTAGTTTCATTTCACATCAACCACGTAACAATACAAATCCTCAAA
ATAGAGCCTTGAGATTGCCTTCCCATCACTTAAAAATAATATTTTTATTT
TAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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