FC872606

Overview
NameFC872606
Unique NameFC872606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.854e-27
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNEDPAEPEVE 255
            VAEPEI DLE+D   ELLVLASDGLWDVVPNEDAVALA++ EEPE AARKLT+TAF+RGSADNITCIVV+F H  +    P++E
Sbjct:  277 VAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSADNITCIVVKFRH--DKTESPKIE 358          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.732e-24
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHHVNED 234
            VA+PEI + E+D+  E L+LASDGLWDVVPNEDAV+L +  EEPE AARKLTETAF+RGS DNITCIVV+F H   D
Sbjct:  405 VADPEIQEQEIDDELEFLILASDGLWDVVPNEDAVSLVKIEEEPEAAARKLTETAFSRGSGDNITCIVVKFQHDKMD 481          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.043e-22
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 222
            VAEPEI +  V+E  E LVLASDGLWDVV NE+AV+LA+T + PE  ARKLTE A++RGSADNITCIVV+FHH
Sbjct:  287 VAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVARKLTEIAYSRGSADNITCIVVQFHH 359          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C07_ORYSJ (Probable protein phosphatase 2C 7 OS=Oryza sativa subsp. japonica GN=Os01g0618200 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.981e-20
Identity = 48/73 (65.75%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 222
            VAEPE+ + E+D+  E L+LASDGLWDVV NE AVA  +  E PE AARKL E AF RGS DNITCIVV+F H
Sbjct:  291 VAEPEVQEQEIDDDLEFLILASDGLWDVVSNEHAVAFVKAEEGPEAAARKLAEIAFARGSTDNITCIVVKFLH 363          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 222
            AEP I +  VDEG E LVLA+DGLWDV+ NEDAV+L +  + P+ AA KLTE A +R + DN+TCIV++FHH
Sbjct:  300 AEPNIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVARSRLTLDNVTCIVLQFHH 371          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.497e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            VA+PEI + +VD   E L+LASDGLWDVV NE+AV + +  E+PE  A++L   A+ RGSADNITC+VVRF
Sbjct:  209 VADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRF 279          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.567e-17
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 AEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 222
            AEP+I +  VDE  E L+LA+DGLWDV+ NEDAV+L +  + P+ AA KLTE A +R + DNITCIV++FHH
Sbjct:  274 AEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVAHSRLTLDNITCIVLQFHH 345          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.965e-17
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            VA+PEI + ++D+  E L+LASDGLWDV  NE+AVA+ +  E+PE + +KL   A  RGSADNITC+VVRF
Sbjct:  209 VADPEIQEEKIDDSLEFLILASDGLWDVFSNEEAVAVVKEVEDPEESTKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.791e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRF 216
            VA+PEI + ++D+  E L+LASDGLWDV  NE AVA+ +  E+PE +A+KL   A  RGSADNITC+VVRF
Sbjct:  209 VADPEIQEEKIDDTLEFLILASDGLWDVFSNEAAVAMVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRF 279          
BLAST of FC872606 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.329e-16
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 VAEPEI*DLEVDEGFELLVLASDGLWDVVPNEDAVALARTGEEPEIAARKLTETAFTRGSADNITCIVVRFHH 222
            V +PEI +  +D   E L+LASDGLWDVV NE+AV + R+  +PE AA+KL + A+ R S+DNITC+VVRF H
Sbjct:  202 VVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLH 274          
The following BLAST results are available for this feature:
BLAST of FC872606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2C76_ARATH2.854e-2773.81Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C52_ORYSJ1.732e-2470.13Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C13_ORYSJ8.043e-2271.23Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
P2C07_ORYSJ1.981e-2065.75Probable protein phosphatase 2C 7 OS=Oryza sativa ... [more]
P2C55_ORYSJ2.678e-1759.72Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C59_ARATH3.497e-1759.15Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C56_ORYSJ4.567e-1758.33Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C71_ARATH5.965e-1757.75Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH7.791e-1759.15Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C45_ORYSJ1.329e-1656.16Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872606 ID=FC872606; Name=FC872606; organism=Citrus clementina; type=EST; length=604bp
GGGGTTGCGGAACCTGAGATCTAGGACCTTGAAGTAGATGAAGGATTTGA
GCTGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGG
ATGCTGTTGCACTTGCCCGAACAGGGGAAGAACCTGAAATCGCAGCTCGG
AAGTTAACGGAGACTGCTTTCACCCGAGGCAGTGCTGACAACATAACGTG
CATTGTAGTGAGATTCCACCACGTCAATGAAGATCCAGCCGAACCTGAAG
TGGAGCAGGAGTAGGAATCTTCATTTATGTTGCATGGTGTAGGTTTATCG
ACCCTTTAGGCTGTAGATCATCTGGAAATCTGCACATGCATGGCTGAATG
TGCATAGCAACAGGGAGGAAGGCGATTTTTTTATTCATTGTTTCTTTTTT
TTCCCCGCACCCCCCTAATTTGAACCTTTCTGTATTGACTGCATATATTG
AGTCTTGGTTCATTCCAGAATAACTATTCCTCTTCGCTCCATAATGTGGC
CTGTAAATCTGTATGTCTAAATGCCCGTTCTGGGTATTTCGGTCTTAAGT
TAATAAAAACTCAAGGTTTTCTAGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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