FC872629

Overview
NameFC872629
Unique NameFC872629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10017 contig Ccv1_Contig10017:1..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872629 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.203e-33
Identity = 76/167 (45.51%), Postives = 104/167 (62.28%), Query Frame = 1 
Query:   49 DNSLNDNQFSVSRPATYDTDQRYSRLQRDGLVSRRDKSMIYFQEDAQPIRRNMSSSGRESLGFG-----KKQNVVDSEEDCKLVNSESSDKALATKA----AYGPYTQTSTEDEDVCPTCLDEYTPENPKITTRCSHHFHLGCIYEWLERSESCPICGKEMEFCESP 522
            DN L++   S  RP  YD D RY R     LVSRR+K   +  E+ +P+R + S +  ES G G       ++ +  ++  +  +S+SS + L +++    A        +EDEDVCPTCL+EYT ENPKI T+CSHHFHL CIYEW+ERSE+CP+CGK MEF E+P
Sbjct:   70 DNFLSEAFRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRSD-SDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNETP 231
The following BLAST results are available for this feature:
BLAST of FC872629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH1.203e-3345.51E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BD08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872629 ID=FC872629; Name=FC872629; organism=Citrus clementina; type=EST; length=818bp
GGGGGAACTGCTTCTTCGGCTTCATCAGTACCTGCAACTACTCTACCTGA
TAATTCTCTAAATGATAATCAATTCTCAGTGTCCAGACCGGCCACTTATG
ATACTGATCAGAGATACTCTCGTTTACAGCGTGATGGTTTGGTCTCTAGG
CGTGATAAGTCGATGATTTATTTTCAAGAGGATGCACAGCCAATAAGAAG
AAATATGAGTAGCTCAGGTAGAGAATCGTTGGGTTTTGGGAAGAAACAGA
ATGTAGTTGATTCTGAAGAAGATTGTAAACTTGTCAATTCCGAGTCCTCG
GATAAGGCTTTGGCAACTAAAGCTGCATATGGACCTTATACGCAAACATC
TACCGAAGATGAAGATGTCTGCCCTACTTGTCTTGATGAATATACTCCAG
AAAATCCTAAAATCACAACACGTTGTTCCCATCATTTTCACCTTGGTTGT
ATTTACGAGTGGCTGGAAAGAAGTGAAAGTTGTCCAATTTGTGGGAAGGA
GATGGAGTTCTGTGAAAGCCCTTAAGTTTATGTTCATAAGATTTTAAAGC
AATGGAATGATTACAGAGATACAGCAGCCAGGGGAAATCTGTAAATAGAA
AATCTGTTCTTGTTTGAAACTTACTTATGCTTGGAAAAAATATTGTTCTC
TATGCGTCACAAGTTTCATTTCCTTCATAGTTTCCTTCTATATGTAATGG
TTAGATTTGTATTTTTAGTGTACGAACTTACCCATCAATGTCAACTTATA
TCAACTAATTCCATCTATATGTAATGATGCTTGCTCCCTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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