FC872634

Overview
NameFC872634
Unique NameFC872634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872634_ssr72 microsatellite FC872634_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
FC872634_ssr195 microsatellite FC872634_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14485 contig Ccv1_Contig14485:130..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 412.149 bits (1058), Expect = 1.767e-114
Identity = 207/269 (76.95%), Postives = 224/269 (83.27%), Query Frame = 3
Query:    3 MTDENQVDVKDEV-AELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA 806
            M D+NQ +VKDEV A++APFDPT       VVIQD +DDSV KLAE  E  + SEG ESTF GL      P+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSK+NRLFFLRCEKCGSGRSVAP KAGF ARVGRRNA
Sbjct:    1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQESTFAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKENRLFFLRCEKCGSGRSVAPNKAGFMARVGRRNA 269          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 6.732e-106
Identity = 196/270 (72.59%), Postives = 219/270 (81.11%), Query Frame = 3
Query:    3 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA 806
            M DE Q++ K+E  E+APFDPT       VVIQDP+D+ VDKLAE TE  SV+E  E++F GL       VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRY+NEYVIC GCKSPDTILSK+NRLFFLRCE+CGS RSVAPIKAGF A+VGRR A
Sbjct:    1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASFVGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICHGCKSPDTILSKENRLFFLRCEQCGSSRSVAPIKAGFVAQVGRRKA 268          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 375.941 bits (964), Expect = 1.404e-103
Identity = 189/267 (70.79%), Postives = 217/267 (81.27%), Query Frame = 3
Query:    3 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEITETSSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    E +++  V++GLES+FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSK+NRLFFLRCEKCGS RSVAPIK GF ARV RR
Sbjct:    1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESSFTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKENRLFFLRCEKCGSQRSVAPIKTGFVARVSRR 266          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.796e-58
Identity = 113/191 (59.16%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  234 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  SVA IK GFQA  GRR
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGRR 325          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 113/191 (59.16%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  234 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 113/191 (59.16%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  234 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 325          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.002e-58
Identity = 111/190 (58.42%), Postives = 138/190 (72.63%), Query Frame = 3
Query:  234 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  SVA IK GFQA  G+R
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSVASIKTGFQAVTGKR 323          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.915e-58
Identity = 112/191 (58.64%), Postives = 138/191 (72.25%), Query Frame = 3
Query:  234 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  S A IK GFQA  G+R
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLYFLQCETCHSRCSAASIKTGFQAVTGKR 325          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.915e-58
Identity = 112/194 (57.73%), Postives = 138/194 (71.13%), Query Frame = 3
Query:  228 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRRNA 806
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++KGRF PK  E +LRRY+ EYV C  C+SP+TIL KD RLFFL+CE CGS  SVA IK+GFQA  G+R A
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQAVTGKRAA 306          
BLAST of FC872634 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.388e-57
Identity = 108/176 (61.36%), Postives = 134/176 (76.14%), Query Frame = 3
Query:  279 EDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKDNRLFFLRCEKCGSGRSVAPIKAGFQARVGRR 800
            ++ + DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL KD RL+FL+CE C S  SVA IK GFQA +G+R
Sbjct:  144 DNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDMRLYFLQCETCHSRCSVAIIKIGFQAVMGKR 319          
The following BLAST results are available for this feature:
BLAST of FC872634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
IF2B_MALDO1.767e-11476.95Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT6.732e-10672.59Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH1.404e-10370.79Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN1.796e-5859.16Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT3.064e-5859.16Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN3.064e-5859.16Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE4.002e-5858.42Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB8.915e-5858.64Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME8.915e-5857.73Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN3.388e-5761.36Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872634 ID=FC872634; Name=FC872634; organism=Citrus clementina; type=EST; length=808bp
CTATGACGGACGAAAATCAAGTAGATGTGAAGGACGAGGTGGCAGAACTT
GCCCCCTTCGATCCTACTAAAAAGAAGAAGAAGAAGAAGGTTGTAATACA
GGATCCTTCAGATGATTCTGTGGACAAACTGGCCGAGATAACTGAAACTT
CATCAGTCTCTGAGGGGCTTGAAAGTACTTTTACTGGTTTGAAAAAGAAG
AAGAAGAAACCAGTAGAAAGCAGTCTATTGAACGATGAGATTGGGGATGC
AGGAGACGATTTGGATGGTCACGTGGGTGAGGATGATGAAGCTGATGGAA
GTGGTGGTCCACGGCAGCGTTATCCATGGGAAGGGAGTGATCGCGACTAT
GAATATGAGGAGCTTCTTGGTAGGGTCTTTAACATCCTCCGAGAGAATAA
TCCTGAACTTGCAGGAGATAGGCGTAGAACAGTCATGAGACCTCCACAAG
TTCTTCGTGAAGGAACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTC
TGCAAGACCATGCATCGGCAGCCAGATCATGTCATGACATTTTTGCTTGC
TGAACTGGGGACAAGTGGGTCACTGGACGGACAGCAAAGACTGGTCGTGA
AGGGCCGATTTGCTCCCAAGAATTTTGAAGGGATACTGCGTCGATATGTC
AATGAATATGTCATCTGTCTTGGGTGCAAAAGTCCTGACACGATACTTTC
AAAGGATAACCGCCTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGAC
GATCAGTTGCTCCCATCAAAGCTGGTTTCCAGGCACGTGTTGGTCGTAGA
AATGCTGG
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