FC872646

Overview
NameFC872646
Unique NameFC872646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872646_ssr556 microsatellite FC872646_ssr556:556..567. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9420 contig Ccv1_Contig9420:874..1558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872646 vs. ExPASy Swiss-Prot
Match: EP1G_DAUCA (Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    4 YYDKVDSQPTEETFTLFDR------------DSIWETECQLPERCGKFGLCDDNQCVACPTEKG-LLGWSKECAPTLVNFCRIAAFHYYKVEG 243
            Y DKVD    E T+TLF +                 +ECQLP++CG FGLC+++QCV CPT  G +L WSK C P  ++ C    FHY K+ G
Sbjct:  293 YNDKVDYGAWEVTYTLFLKAPPPLFQVSLAATESESSECQLPKKCGNFGLCEESQCVGCPTSSGPVLAWSKTCEPPKLSSCGPKDFHYNKLGG 385
The following BLAST results are available for this feature:
BLAST of FC872646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EP1G_DAUCA3.511e-1443.01Epidermis-specific secreted glycoprotein EP1 OS=Da... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3BE06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872646 ID=FC872646; Name=FC872646; organism=Citrus clementina; type=EST; length=685bp
GGGTATTACGACAAGGTTGATTCGCAGCCAACGGAAGAAACATTCACTCT
CTTTGATAGAGATTCAATTTGGGAAACTGAGTGTCAGCTTCCTGAGAGAT
GTGGTAAATTTGGACTGTGTGATGACAATCAATGTGTTGCTTGTCCTACA
GAGAAGGGCTTGCTTGGCTGGAGTAAAGAGTGTGCACCGACGCTAGTGAA
TTTTTGTCGGATAGCGGCTTTCCATTATTATAAAGTTGAAGGGGTTGATC
ATTATATTAGCAAATATAATAATGGAACTGGACCCATCAGAGTTGAAGAT
TGTGGCAACAGATGTAGCACGGATTGTAGATGTGTGGGGTATTTTTACCA
TCAGGAGACATCGAAATGTTGGATTGCTTTTGACTTGAAGACTCTTACCA
AATTCCCCAACTCTACACATGTTGGATTCATCAAGGTTGCCCCGCAATTA
AGTATCAAATAAGTGGATTAGATCTGTGATCGAAATAACAACAGATAGAT
ATGTGGGCTTTCAATGCCACCACAATAATAACTGTTGTTTGTCCATATAT
AAAATAATGAATGAATGAGTGAAATGTTTGTGTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top