FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:1067..1840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RK11_SPIOL (50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 227
            G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+L  KKKE+
Sbjct:  155 GAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEV 222          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RK11_ARATH (50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKK 221
            GVEKGSKDP+Q KVG ITI+QLR IA EKLPDLNCT+IESAMRIIAGTAANMGIDIDPP+LE KKK
Sbjct:  153 GVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILEPKKK 218          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THERP (50S ribosomal protein L11 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKG+ DPK+QKVG++T EQ+R IA  K+PDLN   +E+AMR+I GTA +MGI++
Sbjct:   84 GIEKGAADPKRQKVGRVTREQIREIAQLKMPDLNARDLEAAMRMIEGTARSMGIEV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PERMH (50S ribosomal protein L11 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 34/57 (59.65%), Postives = 47/57 (82.46%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            G++KG+ DPK++KVGK+T EQ+R IA  K+ DLN   IE+AMRIIAGTA +MGI+++
Sbjct:   85 GIKKGASDPKREKVGKVTKEQIREIAEIKMKDLNTEDIEAAMRIIAGTARSMGIEVE 141          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CYAP4 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E+GS +P ++KVGKIT  QLR IA  KLPDLN   +++AMRI+AGTA NMG+ I
Sbjct:   84 GIERGSGEPNKKKVGKITTAQLREIAQTKLPDLNANDVDAAMRIVAGTARNMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11B_BACHD (50S ribosomal protein L11-2 OS=Bacillus halodurans GN=rplK2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.059e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKG+  P ++ VG IT +QLR IA  KLPDLN TSI+ AM+IIAGTA NMGI+I+
Sbjct:   83 GVEKGAAQPGKEVVGSITTQQLRTIAEIKLPDLNTTSIDRAMKIIAGTARNMGINIE 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THEEB (50S ribosomal protein L11 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +P ++KVG IT  QLR IA +K+PDLN   IE+AMRII GTA NMG+ I
Sbjct:   84 GIEKGSGEPNKKKVGSITRAQLREIAEKKMPDLNANDIEAAMRIIEGTARNMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GEOSL (50S ribosomal protein L11 OS=Geobacter sulfurreducens GN=rplK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +G+E GS  P + KVGK+T EQ+R IAT+KLPD+N  S+E+AMR + GTA +MG++I
Sbjct:   83 VGIESGSSVPNKNKVGKLTREQVREIATKKLPDMNAASLEAAMRTVEGTARSMGVEI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_BDEBA (50S ribosomal protein L11 OS=Bdellovibrio bacteriovorus GN=rplK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.359e-12
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +E GSK P++ KVGKI  +Q++ IAT KLPDLNC  +ESAM  +AGTA +MGIDI
Sbjct:   85 LESGSKQPQKDKVGKINNDQIKQIATTKLPDLNCLKVESAMSQVAGTAKSMGIDI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THEPX (50S ribosomal protein L11 OS=Thermoanaerobacter sp. (strain X514) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E GS  P +QKVGKIT EQLR IA  K+ DLN + IE+AMR+IAGTA +MGI+I
Sbjct:   84 GIESGSPQPNKQKVGKITREQLREIAEIKMKDLNASDIEAAMRMIAGTARSMGIEI 139          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RK11_SPIOL4.896e-2683.8250S ribosomal protein L11, chloroplastic OS=Spinac... [more]
RK11_ARATH1.425e-2586.3650S ribosomal protein L11, chloroplastic OS=Arabid... [more]
RL11_THERP8.108e-1358.9350S ribosomal protein L11 OS=Thermomicrobium roseu... [more]
RL11_PERMH8.108e-1359.6550S ribosomal protein L11 OS=Persephonella marina ... [more]
RL11_CYAP48.108e-1360.7150S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11B_BACHD1.059e-1264.9150S ribosomal protein L11-2 OS=Bacillus halodurans... [more]
RL11_THEEB2.359e-1262.5050S ribosomal protein L11 OS=Thermosynechococcus e... [more]
RL11_GEOSL2.359e-1256.1450S ribosomal protein L11 OS=Geobacter sulfurreduc... [more]
RL11_BDEBA2.359e-1261.8250S ribosomal protein L11 OS=Bdellovibrio bacterio... [more]
RL11_THEPX3.081e-1264.2950S ribosomal protein L11 OS=Thermoanaerobacter sp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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