FC872735

Overview
NameFC872735
Unique NameFC872735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1057 contig Ccv1_Contig1057:206..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 3
Query:   93 IPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQI 407
            +P  VQLGE+TE EL+ YDGSD  KPLLMAIKGQIYDVS+SRMFYGPGGPYA+FAG+DASRALA MSF+ QDLTG+I GL   ELE LQDWEYKFM KYVKVG I
Sbjct:   62 LPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 3
Query:   93 IPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQNHD 473
            IP+ VQ+GE+TE EL+ YDGSDP KPLLMAIK QIYDV++SRMFYGPGGPYA+FAG+DASRALA MSF+ +DLT ++ GL   EL+ LQDWEYKFM KY KVG +    +   T +  +  EN   D
Sbjct:   66 IPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQD 192          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  117 EVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVS 413
            E T  +L  Y+G+D +KP+ +AIKG+++DV+  + FYG GG Y+MFAG+DASRAL  MS + +D++ ++EGL++ E+  L DWE KF  KY  VG++VS
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQ 464
            + T  ELR YDG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  KY  VG+++ E       + D+ P+++
Sbjct:   72 DFTPAELRRYDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVYSDDEEPKDE 189          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DWE +F  KY  VG+++ E       + ++ P++++
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 190          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQ 464
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  KY  VG+++ E       + D+ P+++
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKEGEEPTVYSDDEEPKDE 189          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DWE +F  KY  VG+++ E       + ++ P++++
Sbjct:   72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 190          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  KY  VG+++ E       + ++ P++++
Sbjct:   71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 189          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDK 449
            + T  ELR +DG  DP   +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA    D + L    + LSD   ++ E L DW+ +F  KY  VG+++ +   +PT   DK
Sbjct:   71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKD-GEEPTVYSDK 182          
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  123 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD-WEYKFMEKYVKVG----QIVSEQTSKPTKNGDKVPENQNH 470
            TE EL  Y G + ++P+ +A+KG ++DV+  + FYG G PY   AG+D+SR +A MS DP DLT +I GL+  ELE L D +   +  KY  VG    +I++E  S    N D  PE+Q H
Sbjct:   47 TEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS---PNLDFKPEDQPH 164          
The following BLAST results are available for this feature:
BLAST of FC872735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
MSBP2_ARATH7.084e-4278.10Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH2.976e-4062.20Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH1.484e-2349.49Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
PGRC1_RAT2.896e-1942.50Membrane-associated progesterone receptor componen... [more]
PGRC1_PONAB8.427e-1941.32Membrane-associated progesterone receptor componen... [more]
PGRC1_MOUSE8.427e-1941.67Membrane-associated progesterone receptor componen... [more]
PGRC1_HUMAN8.427e-1941.32Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG1.877e-1840.50Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN4.182e-1844.35Membrane-associated progesterone receptor componen... [more]
NENF_RAT4.182e-1842.98Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872735 ID=FC872735; Name=FC872735; organism=Citrus clementina; type=EST; length=702bp
GGGGGCCGCCAGAAGACTTGAAGAACAAGCTCATCAGCTCCAGCGCCGCG
GCGTCGGCGGCGACGGCGGCTAACTTTTCGAACCAAACGGTGATCCCCGA
AACGGTGCAGCTAGGAGAAGTCACTGAACATGAGTTGAGAGCTTATGATG
GTTCTGACCCTAATAAGCCTCTTTTGATGGCTATCAAGGGACAAATCTAC
GACGTCTCTCGCTCCAGGATGTTCTATGGACCTGGAGGGCCATATGCAAT
GTTTGCTGGAAGGGACGCCAGTAGAGCCTTAGCTCTTATGTCTTTTGACC
CTCAAGACCTAACTGGGAATATTGAAGGCCTTAGTGATTCTGAGCTTGAA
GTTCTGCAAGATTGGGAATATAAATTCATGGAAAAATATGTCAAAGTTGG
CCAGATTGTCTCGGAACAAACAAGCAAACCCACCAAGAATGGAGATAAAG
TACCTGAGAATCAAAACCACGACGGTGCCTAAGCACAATAGAAGTTATAT
TTATTGGTGTACTCAGCAAAACAAAGACGGTGCAGAAACACAATAGAAGT
TATATTTATTTTTGTACTCTTCAAATGGTTACTTTTCTGCTTCCTTCCAT
TGCTTATGTATCTTAGTTCACTCCTCTTTTCTCCTCTTGTATAATCTTTT
GCCTTCTATAAATCACATTTAGCCAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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