FC872735
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 7.084e-42 Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 3 Query: 93 IPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQI 407 +P VQLGE+TE EL+ YDGSD KPLLMAIKGQIYDVS+SRMFYGPGGPYA+FAG+DASRALA MSF+ QDLTG+I GL ELE LQDWEYKFM KYVKVG I Sbjct: 62 LPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTI 166
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 2.976e-40 Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 3 Query: 93 IPETVQLGEVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQNHD 473 IP+ VQ+GE+TE EL+ YDGSDP KPLLMAIK QIYDV++SRMFYGPGGPYA+FAG+DASRALA MSF+ +DLT ++ GL EL+ LQDWEYKFM KY KVG + + T + + EN D Sbjct: 66 IPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVKVAGSEPETASVSEPTENVEQD 192
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23 Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 3 Query: 117 EVTEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQDWEYKFMEKYVKVGQIVS 413 E T +L Y+G+D +KP+ +AIKG+++DV+ + FYG GG Y+MFAG+DASRAL MS + +D++ ++EGL++ E+ L DWE KF KY VG++VS Sbjct: 2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19 Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQ 464 + T ELR YDG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DW+ +F KY VG+++ E + D+ P+++ Sbjct: 72 DFTPAELRRYDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVYSDDEEPKDE 189
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_PONAB (Membrane-associated progesterone receptor component 1 OS=Pongo abelii GN=PGRMC1 PE=2 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19 Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467 + T ELR +DG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DWE +F KY VG+++ E + ++ P++++ Sbjct: 72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 190
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4) HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19 Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQ 464 + T ELR +DG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DW+ +F KY VG+++ E + D+ P+++ Sbjct: 72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKEGEEPTVYSDDEEPKDE 189
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_HUMAN (Membrane-associated progesterone receptor component 1 OS=Homo sapiens GN=PGRMC1 PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19 Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467 + T ELR +DG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DWE +F KY VG+++ E + ++ P++++ Sbjct: 72 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 190
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3) HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18 Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDKVPENQN 467 + T ELR +DG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DW+ +F KY VG+++ E + ++ P++++ Sbjct: 71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKLLKEGEEPTVYSDEEEPKDES 189
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18 Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 3 Query: 117 EVTEHELRAYDG-SDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSD---SELEVLQDWEYKFMEKYVKVGQIVSEQTSKPTKNGDK 449 + T ELR +DG DP +LMAI G+++DV++ R FYGP GPY +FAGRDASR LA D + L + LSD ++ E L DW+ +F KY VG+++ + +PT DK Sbjct: 71 DFTPAELRRFDGVQDPR--ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKLLKD-GEEPTVYSDK 182
BLAST of FC872735 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18 Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3 Query: 123 TEHELRAYDGSDPNKPLLMAIKGQIYDVSRSRMFYGPGGPYAMFAGRDASRALALMSFDPQDLTGNIEGLSDSELEVLQD-WEYKFMEKYVKVG----QIVSEQTSKPTKNGDKVPENQNH 470 TE EL Y G + ++P+ +A+KG ++DV+ + FYG G PY AG+D+SR +A MS DP DLT +I GL+ ELE L D + + KY VG +I++E S N D PE+Q H Sbjct: 47 TEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS---PNLDFKPEDQPH 164 The following BLAST results are available for this feature:
BLAST of FC872735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872735 ID=FC872735; Name=FC872735; organism=Citrus clementina; type=EST; length=702bpback to top |