FC872741

Overview
NameFC872741
Unique NameFC872741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872741_ssr113 microsatellite FC872741_ssr113:113..122. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10049 contig Ccv1_Contig10049:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 8.865e-105
Identity = 196/217 (90.32%), Postives = 205/217 (94.47%), Query Frame = 2
Query:  131 MAR*PDVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE-PAPSNIKEGQTIVVGGASEANTKKPCRSSS 778
            MAR PD EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+YRIISKKS+SS +  A +NIKEGQTI V   SE+N KKPC SSS
Sbjct:    1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS 217          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.680e-87
Identity = 164/215 (76.28%), Postives = 189/215 (87.91%), Query Frame = 2
Query:  131 MAR*PDVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCRSS 775
            MA   D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DLKHLRAV+ ED Q+ AE+EGLSF+ETSALEA+N+EKAFQTIL+EIY IISKK+L++ E + +   +G TI V  AS AN ++ C S+
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADAS-ANQRRSCCST 214          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 314.309 bits (804), Expect = 5.974e-85
Identity = 164/213 (77.00%), Postives = 181/213 (84.98%), Query Frame = 2
Query:  146 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCRSS 775
            D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QVEG+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLR+VA ED QS AE+EGLSF+ETSALEA NVEKAFQTIL EIY IISKK+L++ E A +N     +G TI V   S    K+ C SS
Sbjct:    6 DQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTS-GGAKRACCSS 217          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.965e-84
Identity = 158/216 (73.15%), Postives = 182/216 (84.26%), Query Frame = 2
Query:  131 MAR*PDVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGA-SEANTKKPCRSS 775
            MA   D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLRAV+ +D  + +E+EGLSF+ETSALEA N+EKAFQTIL+EIY I+SKK+L++ E        GQ   +  A +  NTKK C S+
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.471e-83
Identity = 157/200 (78.50%), Postives = 177/200 (88.50%), Query Frame = 2
Query:  131 MAR*PDVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVV 730
            M+  PD +YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFENV RWLKELRDHADSNIVIM++GNK+DLKHLR V TE AQ++ EREGLSFIETSALE+ NVEKAFQ IL+EIY I+SKK L S +  P  I EG+ ++V
Sbjct:    1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRP-KIGEGRDVIV 199          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 4.281e-83
Identity = 156/216 (72.22%), Postives = 184/216 (85.19%), Query Frame = 2
Query:  131 MAR*PDVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ-TIVVGGASEANTKKPCRSS 775
            MA   D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALL YD+TK  TF+NV RWL+ELRDH DSNIVI++ GNK+DLKHLRAV+ +D Q+  ++EGLSF+ETSALEA+NV+KAFQTIL++IY IISKK+L++ E A S    GQ T +    + AN K+ C S+
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCST 216          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.289e-79
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 2
Query:  146 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSN 703
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.289e-79
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 2
Query:  146 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSN 703
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.289e-79
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 2
Query:  146 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSN 703
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193          
BLAST of FC872741 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 1.289e-79
Identity = 147/189 (77.78%), Postives = 172/189 (91.01%), Query Frame = 2
Query:  146 DVEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSN 703
            D EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN 193          
The following BLAST results are available for this feature:
BLAST of FC872741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2A_ARATH8.865e-10590.32Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU1.680e-8776.28Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH5.974e-8577.00Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA2.965e-8473.15Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE1.471e-8378.50Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_TOBAC4.281e-8372.22Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11A_RAT1.289e-7977.78Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.289e-7977.78Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.289e-7977.78Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.289e-7977.78Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872741 ID=FC872741; Name=FC872741; organism=Citrus clementina; type=EST; length=898bp
GGGGAGCAACAGAGAAATCAAAATCACAGTTTCCGGTTCTACGCTTTAAA
TTCATCTTCACTTCTTCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATT
TGTTATCTAAAGATATATATATAATTATAAATGGCGAGGTGACCGGACGT
GGAATACGATTACTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCG
GCAAGTCGAATTTACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAG
TCCAAATCCACTATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGA
AGGAAGGACAATAAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGAT
ACAGAGCAATAACCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTA
GTTTATGACGTGACGAAACCAACAACATTTGAAAATGTGAGCCGATGGCT
GAAGGAACTGAGGGACCACGCAGACTCCAACATTGTGATCATGATGATTG
GCAATAAGACTGATCTGAAACACCTCCGAGCTGTTGCCACAGAGGATGCC
CAAAGCTATGCTGAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCT
TGAAGCAATAAATGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATAT
ACCGGATAATCAGCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCA
AACATCAAAGAAGGACAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAA
CACAAAGAAACCTTGTCGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTT
GTTTATCTCAATTTCTTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAAT
CTTTCATTCTCTCAATGGTTTTATGGTTAAGCTTCTATTATTTGTTGT
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