FC872764

Overview
NameFC872764
Unique NameFC872764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872764_ssr266 microsatellite FC872764_ssr266:266..277. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10055 contig Ccv1_Contig10055:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872764 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.397e-67
Identity = 140/289 (48.44%), Postives = 174/289 (60.21%), Query Frame = 3
Query:    6 GECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPV-IRIEADPVSESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD--SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGEPPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVW 860
            GEC+HFASA ASAR ALP P E+ + ++         PP+ +  I + + +E    S +     NCEPIIEEP SPG +C                     PT++L   +F       ME N  + +   S ALVAL     S+PT KLK  + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE  NS   P+ +C  K S K+C  E C  CNS+ E N+  VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S  PI+VPR  I +L R  V+
Sbjct: 1643 GECRHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNRENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEI-PTIKLNIEQFGMTLREHMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVY 1930          
BLAST of FC872764 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.495e-64
Identity = 147/292 (50.34%), Postives = 176/292 (60.27%), Query Frame = 3
Query:    6 GECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPV---SESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD---SSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGEPPNSVGSPQYRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVW 860
            GEC+HFASA ASAR ALP  +EKG+ T +      ++P  +  P P  R +   V   SE   ++  CEPIIEEP SP P+                      PT+RL    F  N    ME NK  LQD   SSALVALTAE AS+P  KLK  + LRTEH VY LPD H LL   ++R+PDDP  YLLAIW+PGE  +S+      C  + +  LC+ E C+SCNS+ E  + IVRGTILIPCRTA RG FPLNGTYFQVNEVFADH +S +PINVPR  I  L R  V+
Sbjct: 1052 GECRHFASAFASARLALPS-TEKGMGTPD------KNPLPLHLPEPFQREQGSEVVQHSEPAKKVTCCEPIIEEPASPEPETAEVSIADIEEAFFEDPEEI--PTIRLNMDAFTSNLKKIMEHNKE-LQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVY 1333          
BLAST of FC872764 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.227e-55
Identity = 127/294 (43.20%), Postives = 167/294 (56.80%), Query Frame = 3
Query:    9 ECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNCEPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXX-------PTLRLQEREFKENFPNFMEMNKVMLQDSSALVALTAEAASVPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGEPPNSVGSPQYRCNSKDSK--LCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVWL 863
            EC+H++SA ASAR ALP P E    +        +  P+VVN  P + +  +   E+  +  NCEPIIEEP SP P+                             PT+ L +   +    + + +NK     S  LV L+  AA++P RKLK    LRTEHHV+ LPD H +L GF+RR+ +D  PYLLAIW+PGE  NS+  P+ RC   +S   LCN   C+ CN   E  +  VRGTILIPCRTA RG FPLNGTYFQ NEVFADH++S +PI+VP   I +L+R + +L
Sbjct:  962 ECRHYSSARASARLALPEPEESDRTSVMIHERRSKRKPVVVNFRPSLFLYQEKEQEA-QRSQNCEPIIEEPASPEPEYIEHDIEDYPRDKNNVGTSEDPWENKDVIPTIILNK---EAGTSHDLVVNKEA-GTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYL 1250          
BLAST of FC872764 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.478e-48
Identity = 120/292 (41.10%), Postives = 155/292 (53.08%), Query Frame = 3
Query:    9 ECKHFASAVASARFALPGPSEKGIVTSEFGNGIGQSPPLVVNPIPVIRIEADPVSESGYQINNC-EPIIEEPRSPGPQCXXXXXXXXXXXXXXXXXXXXXPTLRLQEREFKENFPNFMEMNKVMLQD----SSALVALTAEAASVPT---RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGEPPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVW 860
            ECK+FASA  S++  L  P EK    + F N   Q   + V+    I +  + VS        C +P++E P SP  +                      P +       K++  + + ++  M       S ALV  T E A +P    RK+K    LRTEH VYVLPD HELL  F+RR  DDPSPYLLAIW PGE  +S   P+ +C+S  SKLC  + C  C ++ E+N+ I RGTILIPCRTA RG FPLNGTYFQ NEVFADHETS +PI   R     L +  ++
Sbjct:  693 ECKYFASAYVSSKVLLESPEEKMHEPNTFMNAHSQD--VAVDMTSNINLVEECVSSGCSDQAICYKPLVEFPSSPRAEIPESTDIEDVPFMNLYQSYASVPKIDFDLDALKKSVEDALVISGRMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALY 982          
The following BLAST results are available for this feature:
BLAST of FC872764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH1.397e-6748.44Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH5.495e-6450.34Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH1.227e-5543.20DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH2.478e-4841.10DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CC10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872764 ID=FC872764; Name=FC872764; organism=Citrus clementina; type=EST; length=871bp
GGGGGGGGGAGTGCAAACACTTTGCCAGTGCAGTTGCGAGTGCAAGGTTT
GCCTTACCAGGGCCATCAGAAAAAGGGATAGTGACGTCAGAGTTTGGTAA
TGGAATTGGACAAAGCCCTCCTTTGGTTGTCAATCCAATACCAGTGATTC
GCATTGAGGCTGATCCGGTTTCAGAATCTGGATATCAAATCAACAACTGT
GAGCCTATCATTGAGGAGCCACGGTCACCAGGGCCTCAATGTTCAGAATC
TCCAGAATCTGAGATTGATGATGATGATTTCAGCATTGGTGACATTGAAG
AGATTCCTACTCTCAGACTGCAAGAAAGGGAGTTCAAGGAAAATTTCCCA
AATTTCATGGAGATGAACAAGGTCATGCTTCAAGACTCCAGTGCTTTAGT
TGCTTTGACTGCAGAAGCTGCATCCGTGCCCACAAGGAAACTGAAGAGAT
GTGCTCATTTACGCACAGAGCACCATGTCTATGTACTTCCAGATGCGCAT
GAACTACTTCGAGGGTTTGATAGGCGAGATCCTGATGATCCGTCTCCCTA
CCTTCTTGCGATATGGTCACCAGGTGAACCTCCAAATTCAGTTGGCTCAC
CACAGTACAGATGTAACTCCAAAGATTCCAAACTTTGCAATTCGGAGATA
TGCTATTCTTGCAATAGTGTTTGTGAAAGAAATGCTGGTATAGTTCGCGG
AACAATTTTGATACCTTGTCGCACCGCAAATAGAGGCAGATTTCCATTGA
ATGGAACATACTTTCAAGTTAATGAAGTATTTGCAGACCATGAAACGAGC
CATCACCCCATTAATGTTCCTAGGCACACGATTGCTAATCTACGAAGAGA
AATCGTCTGGCTTTGGAAGTT
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