FC872770

Overview
NameFC872770
Unique NameFC872770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length370
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:259..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872770 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:    3 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  320 GAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of FC872770 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:    3 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  320 GAEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of FC872770 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.150e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 3 
Query:    3 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 119
            GAEE++QLGPLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct:  316 GAEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354
[Close]
BLAST of FC872770 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:    3 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 110
            G EE++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct:  318 GIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353
[Close]
BLAST of FC872770 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.713e-11
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:    3 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 110
            G +E++ LGPLNEYERIGLEKAKKELAGSI+KG+SF
Sbjct:  318 GIDEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 353
The following BLAST results are available for this feature:
BLAST of FC872770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MDHG2_BRANA1.770e-1282.05Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.770e-1282.05Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH5.150e-1282.05Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG_CITLA4.360e-1183.33Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_CUCSA9.713e-1180.56Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DG09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872770 ID=FC872770; Name=FC872770; organism=Citrus clementina; type=EST; length=370bp
GGGGAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAATATGAGAGG
ATTGGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATTCAAAAGGG
CATCTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTCCATCGGTT
AAGTTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGCAAGCCTTA
ATGTTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACAAGCGACGA
ATTGGCATGTAAAGCAGTTTGAATGAGCTCATTTCGTTTCAGAGGAGCAA
AACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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