FC872785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RK3B_ARATH (50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1) HSP 1 Score: 294.664 bits (753), Expect = 1.005e-108 Identity = 152/232 (65.52%), Postives = 175/232 (75.43%), Query Frame = 1 Query: 25 LIQRLHQLLHLSPLKTPSYSHSSPY---IFFISRFSTDSAFAAASEIDEEHA-SRIIEAKPGVMTDASKRTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 L+ R++Q L + + TPS S S P+ F I RFS+D+ D A +RIIEAK G M+ SKRTG+IAVKCG+TA WDKWG RIP+S+L+VDDNIVSQVKT EKEG F+LQ+GCGQKK KH++K VGHFRAQGVPLKRKLREFPVTEDALLP+GTSLGVRHF+PGQYVD+ R GF GMPASHGASLSHRS GSTGQRDAPGKVFKG+K G Sbjct: 8 LLSRINQFLSIRSI-TPSSSESLPHCSSFFLIRRFSSDTGLMDGGGSDIIGAQTRIIEAKQGEMSSRSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQGCMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAG 238 HSP 2 Score: 119.013 bits (297), Expect = 1.005e-108 Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFPTYFA 887 G+KM GRMG QRTVKNVWVYKIDPARNLMWVRGQVPGA GNFVFIKDA KKPD+ LPFPTY A Sbjct: 233 GRKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPGAEGNFVFIKDAWCKKPDISKLPFPTYLA 298
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ZYMMO (50S ribosomal protein L3 OS=Zymomonas mobilis GN=rplC PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.146e-46 Identity = 80/163 (49.08%), Postives = 104/163 (63.80%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G +PV+VL ++D V VK +++G+ ++Q+G G K K++TKP GHF V LK KL EFPV+EDA+L +GTS+ HFI GQ VDI RWGF G+ A+HG SLSHRS GSTG R PG+VFK KK G Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLKLEDVQVVAVKNKDQDGYVAVQLGAGSAKAKNVTKPVRGHFAKAEVELKAKLVEFPVSEDAVLEVGTSISADHFIAGQLVDISGQTQGKGFAGAMKRWGFGGLRATHGVSLSHRSHGSTGNRQDPGRVFKNKKMAG 164 HSP 2 Score: 52.373 bits (124), Expect = 1.146e-46 Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KM G MG +QRT +N+ V D R+L++VRG VPG+ G ++ I+DAV Sbjct: 160 KKMAGHMGARQRTQQNLEVISTDAERDLIFVRGSVPGSKGAWLIIRDAV 208
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_NOVAD (50S ribosomal protein L3 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplC PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 9.532e-46 Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G +PV+VL +++ V V+T E++G+ +LQ+G G+ K K++ KP+ HF VPLK ++ EF V +DALL +G+++ HF+PGQYVDI RWGF GM A+HG S+SHR+ GSTG R PG+VFK KK G Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLSLENCQVVSVRTAERDGYVALQLGAGEAKQKNVAKPQREHFAKAEVPLKMEVAEFRVADDALLDVGSTIAASHFVPGQYVDITGQTQGKGFQGAMKRWGFGGMRATHGVSISHRAHGSTGNRQDPGRVFKNKKMAG 164 HSP 2 Score: 48.521 bits (114), Expect = 9.532e-46 Identity = 21/49 (42.86%), Postives = 34/49 (69.39%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAV 839 +KM G MG +QRT +N+ V + D R L++V+G VPG+ ++ ++DAV Sbjct: 160 KKMAGHMGDRQRTQQNLEVVRTDDERGLIFVKGSVPGSKNAWLLVRDAV 208
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_ERYLH (50S ribosomal protein L3 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplC PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 1.240e-45 Identity = 77/164 (46.95%), Postives = 101/164 (61.59%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVT-EDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G +PV+VL ++D V +T E++G+F+LQVG G K K++ KP+ F V LK K+ EF V ED LLP+G ++ HFI GQ VDI RWGF G+ A+HG S+SHRS GSTG R PG+VFKGKK G Sbjct: 2 RTGVIAKKVGMTRLFQEDGRHVPVTVLALEDCQVVSQRTQERDGYFALQVGSGVAKQKNVAKPQREAFAKAEVGLKMKVAEFRVEGEDGLLPVGAAISAEHFIAGQKVDITGYTQGKGFAGAMKRWGFGGLRATHGVSISHRSHGSTGNRQDPGRVFKGKKMAG 165 HSP 2 Score: 58.9214 bits (141), Expect = 1.240e-45 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 875 G+KM G MG +QRT +N+ V + DP R L++V+G VPG +++ I+DAV K P + +PFP Sbjct: 160 GKKMAGHMGDRQRTQQNLEVVRTDPERGLIFVKGSVPGTKNSWMLIRDAV-KLPLPEGVPFP 220
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_MAGSA (50S ribosomal protein L3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplC PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 4.676e-45 Identity = 76/163 (46.63%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+GLIA K G+T + + G +PV+VL VD V ++ EK+G+ ++Q+G G K K+++KP +F V K+KL EF V + LL +GT L HFIPGQYVD+ RW F+G+ A+HG S+SHRS GSTGQR PGKVFKGKK G Sbjct: 2 RSGLIAQKVGMTRIFTEDGTHVPVTVLKVDTCQVVSTRSVEKDGYVAVQLGAGTAKVKNVSKPARANFAKAKVEPKKKLVEFRVAPENLLEVGTELSAAHFIPGQYVDVTGTTIGKGFAGGMKRWNFRGLEATHGVSVSHRSHGSTGQRQDPGKVFKGKKMAG 164 HSP 2 Score: 53.9138 bits (128), Expect = 4.676e-45 Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 3 Query: 690 GQKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK-PDVKLLPFP 875 G+KM G MG +Q T +N+ V D R L+ V+G VPG G++V ++DAV +K PD +PFP Sbjct: 159 GKKMAGHMGDEQVTTQNLTVVSTDADRGLILVKGSVPGHEGSWVLVRDAVKRKLPDG--VPFP 219
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METNO (50S ribosomal protein L3 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplC PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 7.931e-45 Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL VD V +T EK G+ +LQVG G+ K K+++K E G F V KRKL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ ASHG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGITTGKGFAGGMKRWNFGGLRASHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 51.6026 bits (122), Expect = 7.931e-45 Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ ++DAV +K Sbjct: 160 KKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIHVRDAVKRK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METS4 (50S ribosomal protein L3 OS=Methylobacterium sp. (strain 4-46) GN=rplC PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 7.934e-45 Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL VD V +T EK G+ +LQVG G+ K K+++K E G F V KRKL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKVDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSKAERGRFAIAKVEPKRKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 51.2174 bits (121), Expect = 7.934e-45 Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K Sbjct: 160 KKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METRJ (50S ribosomal protein L3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplC PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 8.603e-44 Identity = 75/163 (46.01%), Postives = 99/163 (60.74%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL +D V +T EK G+ +LQVG G+ K K+++ E G F V K+KL EF VTEDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIAQKVGMTRVFTDAGEHVPVTVLKIDQCQVVAHRTVEKNGYVALQVGVGKAKVKNVSAAERGRFAVAKVEPKKKLAEFRVTEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGIKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 51.2174 bits (121), Expect = 8.603e-44 Identity = 23/52 (44.23%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ I+DAV +K Sbjct: 160 KKMPGHLGVERVTTQNLRVVRTDPERGLILVEGAVPGVAGGWIQIRDAVKRK 211
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_SPHWW (50S ribosomal protein L3 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplC PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 2.479e-43 Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 RTG+IA K G+T + + G +PV+VL +++ V + +++G+ ++Q+G G K K++TKPE GHF V K + EF V+ED LL +G + H++ GQ+VDI RWGF G+ A+HG S+SHRSLGSTGQR PGKVFK KK G Sbjct: 2 RTGVIAKKMGMTRLFQEDGRHVPVTVLALENVQVVARREQDRDGYVAVQLGAGSAKPKNLTKPERGHFGKAEVEPKAFVAEFRVSEDGLLDVGAEISADHYVAGQFVDIQGSTQGKGFAGGMKRWGFGGLRATHGVSVSHRSLGSTGQRQDPGKVFKNKKMAG 164 HSP 2 Score: 52.373 bits (124), Expect = 2.479e-43 Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKKPDVKLLPFP 875 +KM G MG K RT +N+ + + D R L++V+G VPG+ G ++ +KD+V K K PFP Sbjct: 160 KKMAGHMGDKNRTQQNLEIVQTDAERGLLFVKGSVPGSKGGWLLVKDSV-KIAAPKDAPFP 219
BLAST of FC872785 vs. ExPASy Swiss-Prot
Match: RL3_METPB (50S ribosomal protein L3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplC PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.211e-43 Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 220 RTGLIAVKCGITATWDKWGARIPVSVLFVDDNIVSQVKTFEKEGFFSLQVGCGQKKDKHMTKPEVGHFRAQGVPLKRKLREFPVTEDALLPIGTSLGVRHFIPGQYVDIXXXXXXXXXXXXXXRWGFKGMPASHGASLSHRSLGSTGQRDAPGKVFKGKKCLG 708 R+G+IA K G+T + G +PV+VL +D V +T EK+G+ +LQVG G+ K K++++ E G F V K+KL EF V+EDAL+P+G + HFIPGQ+VD+ RW F G+ A+HG S+SHRS+GSTG R PGK FK KK G Sbjct: 2 RSGVIARKVGMTRVFTDAGEHVPVTVLQIDQCQVVAHRTTEKDGYVALQVGVGKAKVKNVSQAERGRFAVAKVEPKKKLAEFRVSEDALIPVGAEITADHFIPGQFVDVTGTTTGKGFAGGMKRWNFGGLRATHGVSISHRSIGSTGGRQDPGKTFKNKKMPG 164 HSP 2 Score: 49.6766 bits (117), Expect = 4.211e-43 Identity = 21/52 (40.38%), Postives = 36/52 (69.23%), Query Frame = 3 Query: 693 QKMPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGASGNFVFIKDAVYKK 848 +KMPG +G ++ T +N+ V + DP R L+ V G VPG +G ++ ++D+V +K Sbjct: 160 KKMPGHLGVERVTTQNLKVVRTDPERGLILVEGAVPGVAGGWIQVRDSVKRK 211 The following BLAST results are available for this feature:
BLAST of FC872785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872785 ID=FC872785; Name=FC872785; organism=Citrus clementina; type=EST; length=887bpback to top |