FC872806

Overview
NameFC872806
Unique NameFC872806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10065 contig Ccv1_Contig10065:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872806 vs. ExPASy Swiss-Prot
Match: PPD3_ARATH (PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.082e-51
Identity = 88/114 (77.19%), Postives = 98/114 (85.96%), Query Frame = 3 
Query:   75 VVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID-----WFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 401
            + ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID      FYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K V SFRFI
Sbjct:  134 IAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKTVKSFRFI 247

HSP 2 Score: 41.5874 bits (96), Expect = 5.082e-51
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:   13 EPNGFKSITAFYPQEASSSSV 75
            EPNGFKSITAFYPQE S+S+V
Sbjct:  112 EPNGFKSITAFYPQETSTSNV 132
The following BLAST results are available for this feature:
BLAST of FC872806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPD3_ARATH5.082e-5177.19PsbP domain-containing protein 3, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872806 ID=FC872806; Name=FC872806; organism=Citrus clementina; type=EST; length=655bp
CGCGCCGGGGGGGAACCAAATGGATTCAAATCCATTACTGCTTTCTACCC
ACAAGAAGCATCTAGTTCAAGCGTGTGGTGATCACGGGGCTTGGTCCAGA
TTTTACGAGAATGGAATCTTTTGGCAAAGTTGAAGCTTTTGCTGACACTC
TGGTTAGTGGATTAGATAGAAGCTGGCGAAGACCCCCGGGTGTAGCAGCA
AAACTCATAGATTGGTTTTATTACATAGAGTATACACTGCAAAATCCAGG
TGAGAGCCGTAAACATTTGTTTTCAGCCATTGGGATGGCATCAAATGGTT
GGTACAACAGATTATACACAGTGACTGGCCAGTTTGTGGAAGAAGAATCA
GAGAAATATGGCTCTAATATTGAGAAGGCAGTCGCATCCTTCAGGTTCAT
TTGAAGAAAGAACTACTTCAATGCCGCCGTGCTTTGTTTTGCTAGTTTTG
TATTCGGAGCACGTTACATGTTTGTTACTTATTGTCATTTTCCTCGGTCA
CGGAAGCCAAAAAAAAAAAAAAAAACTCAAATGATTATAGGTAAACCCTG
TCTGAAATTCAAGCACAATTTTGGGTTATGTTGAGCCATAGCCTAAGTGG
AAAGTGAAGGCTCCCCCATCTACATCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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