FC872849

Overview
NameFC872849
Unique NameFC872849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12665 contig Ccv1_Contig12665:653..1366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.747e-25
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  188 KYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.381e-24
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLI
Sbjct:  188 KYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_TOBAC (60S ribosomal protein L8 OS=Nicotiana tabacum GN=RPL8 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLI
Sbjct:  188 KYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVKRN WPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI
Sbjct:  188 KYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_ANOGA (60S ribosomal protein L8 OS=Anopheles gambiae GN=RpL8 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  188 KYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_AEDAL (60S ribosomal protein L8 OS=Aedes albopictus GN=RpL8 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K++VKRNCWPKVRGVAMNPVEHPHGGGNHQHIG ASTV+R  PPG+KVGLI
Sbjct:  188 KYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTPPGRKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLI
Sbjct:  187 KYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLI 237          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+RVK+N WPKVRGVAMNPVEHPHGGGNHQH+GHA+T +RD P G+KVGLI
Sbjct:  189 KYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLI 239          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLI
Sbjct:  188 KYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLI 238          
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL8_XENTR (60S ribosomal protein L8 OS=Xenopus tropicalis GN=rpl8 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.024e-19
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  188 KYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
The following BLAST results are available for this feature:
BLAST of FC872849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL8_SOLLC4.747e-2598.0460S ribosomal protein L8 OS=Solanum lycopersicum G... [more]
RL83_ARATH1.381e-2496.0860S ribosomal protein L8-3 OS=Arabidopsis thaliana... [more]
RL8_TOBAC2.356e-2496.0860S ribosomal protein L8 OS=Nicotiana tabacum GN=R... [more]
RL81_ARATH6.855e-2496.0860S ribosomal protein L8-1 OS=Arabidopsis thaliana... [more]
RL8_ANOGA1.429e-2186.2760S ribosomal protein L8 OS=Anopheles gambiae GN=R... [more]
RL8_AEDAL1.429e-2186.2760S ribosomal protein L8 OS=Aedes albopictus GN=Rp... [more]
RL2_SCHPO2.696e-2078.4360S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL8_DICDI6.005e-2080.3960S ribosomal protein L8 OS=Dictyostelium discoide... [more]
RL8_CAEEL7.843e-2082.3560S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL8_XENTR1.024e-1980.3960S ribosomal protein L8 OS=Xenopus tropicalis GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872849 ID=FC872849; Name=FC872849; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGC
CATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTG
GTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGT
CTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCAC
TGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTC
TCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGG
AAAAATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTAT
GTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGAT
TTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTGGGGCCCCCCCCCCCCCATCAAACTTAA
AACCAAAAAAATTTTTTGGGGGGGCCCCAATTTAAACCCCTTTGGGCAAT
TTCCCCCAAAGGGGGGTTAAAAAAAATTTCCGGGGCCCTTTTTTAAAACC
CCCGGGGGGGGAAA
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