FC872875

Overview
NameFC872875
Unique NameFC872875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:660..1126. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.185e-27
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 245
            APKPSCH+V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  163 APKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.547e-27
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 257
            +PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  212 SPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  228 SPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.310e-26
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  230 SPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.235e-26
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            +PKPSCH VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  238 SPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 49/89 (55.06%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  236 SPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  241 SPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.501e-26
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  236 SPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 260
            +PKPSCH+VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  247 SPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 254
            +PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  249 SPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIT_CARPA1.185e-2760.49Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_POPTR1.547e-2762.79Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI2_PEA1.310e-2658.43Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_SOLTU1.310e-2653.93Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ2.235e-2662.50Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC2.918e-2655.06Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC2.918e-2656.18Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI6.501e-2656.18Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI9_ORYSJ8.491e-2658.14Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR1.109e-2561.18Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bp
GGGCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCAC
AAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTG
TACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATT
CAGCCTGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAA
TCTGATGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATA
AGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGT
GGACAACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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