FC872895

Overview
NameFC872895
Unique NameFC872895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10096 contig Ccv1_Contig10096:1..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_XENLA (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrp1c PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.038e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 339
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_MOUSE (U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.038e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 339
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_HUMAN (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.038e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 339
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_DICDI (U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum GN=snrpC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.996e-18
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTP 405
            MP+YYCDYCD YLTHDSPSVRK H  G +HK  V+ +YQQFE + TQSLI+ R+KE+              ++  L  +P + ++PTP
Sbjct:    1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEY------------EESKGRLIHQPPMGIIPTP 76          
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_BOVIN (U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.175e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 339
            MP+ YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKLYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59          
BLAST of FC872895 vs. ExPASy Swiss-Prot
Match: RU1C_SCHPO (U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe GN=usp103 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  142 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQR 300
            MPRY CDYC  +LTHDS SVRK HNAG  H  NV+ YY +  +++ Q  +++R
Sbjct:    1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEER 53          
The following BLAST results are available for this feature:
BLAST of FC872895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RU1C_XENLA4.038e-1865.15U1 small nuclear ribonucleoprotein C OS=Xenopus la... [more]
RU1C_MOUSE4.038e-1865.15U1 small nuclear ribonucleoprotein C OS=Mus muscul... [more]
RU1C_HUMAN4.038e-1865.15U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
RU1C_DICDI8.996e-1848.86U1 small nuclear ribonucleoprotein C OS=Dictyostel... [more]
RU1C_BOVIN1.175e-1765.15U1 small nuclear ribonucleoprotein C OS=Bos taurus... [more]
RU1C_SCHPO4.781e-1152.83U1 small nuclear ribonucleoprotein C OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AE02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872895 ID=FC872895; Name=FC872895; organism=Citrus clementina; type=EST; length=954bp
GCGGGGGAGACCAAACAGCCCCCCATTCACCTATTGATACCCCCGCTTTT
TCTCTCTCTTAGGGTTTTTCTTCGTGATTCACGTTAGTTCTTGTTTGGGG
CTTTTTATCTGTTTTCAACGTAAATCAATCAACAGAAAGCAATGCCTCGG
TACTACTGTGATTATTGTGACACCTATTTGACGCACGATTCTCCATCTGT
TAGAAAACAGCACAATGCAGGCTACAAGCACAAGGCAAATGTAAGAAGCT
ACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTAATTGATCAGAGA
ATCAAGGAACATCTTGGCCAAACTGCAGCTTTCCAGCAGGTTGGTGCCGC
ATACAATCAGCATCTTTTGGCTCAAAGGCCCCGCCTTCCGGTTCTTCCGA
CACCTGTTATGCCAATGACTGGAAGTGCTCCATTAGTCCCAGGGATGAGG
CCTCCTGTTCTTCCAAGACCAGGTCCGAGTCCTCCAGGTTATGTGTCTGC
TCCAGGCATGCCACCAATGATGGCACCTCCTGGTGCTCCTTCTGCACCTG
GTCAATTAAATGGTTTTCCAAGACCTCCTGCTGTAATGAACCCAACAGCA
GTTTCTGGTAGTGCGGCGCCACCTGCTTCATCCAGTGGAGCCCCTAGTAT
GGCTACACCTCAAACCTACCAAGCCAATCCAACAGTGCCAACGAGTGGAA
ACCTTAATGCCCAAGCTCCTGAGATGAATCATTAGTGTGATCAAGCTGGT
GATTGTAGCAGACTGGGAGATCACCTCAATAGTGAAACAAATGTTTTAGA
CTTATTTTCTCATTTAATTTATGTTGTCCTGGTTTTTGAATATGTAATAT
GTTTTGAGAGCTTGGCATGAACAGTACATACTCGTGTCATTTTTGTATAC
AGTAATCAAATATCATGAACCCAGGGTTACGGGGAATTCTATCTAAAAAA
AAAA
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