FC872908

Overview
NameFC872908
Unique NameFC872908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872908_ssr151 microsatellite FC872908_ssr151:151..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9778 contig Ccv1_Contig9778:4..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872908 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:  234 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 503
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of FC872908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN2.918e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3DC07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872908 ID=FC872908; Name=FC872908; organism=Citrus clementina; type=EST; length=781bp
CGGGCCGGGGCGCACACAGATTTGACTGTCATCAAACTATTCAAGATTCA
AAAGCACATAAAAAGAGATCAAAATCGAAACGAACACTGCAATGCACTGT
CCTCCTCAAATCTTAATCCGCCATCCATTTTTGAGTTTCTTATTCTAATT
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAATGGGATTTCCGTCGGAA
GTTAGAGATATTTTTGTATCCAGAAGGTCAAATAACTCGCCACTGATTGC
CTCTCCTGCTGAAGATCTAAAGGCTAAGGCCGCCAACGACTGCGTTCAAG
AAGGCGTTCGAGCTGGATTAAAGGCCGCTGCCGTAATGTGTGTTGTCACC
GCTGTGCCGACGTTGGTTGCAGTTCGAAAAATTCCTTGGGCAAAGGCAAA
CCTGAATTATACTGGTCAGGCACTCATCATATCCGCAGTGTCAATTGCTT
CTTACTTCATCACTGTTGACAAGACTATTTTGGAGTGTGCAAGGAGGAAT
GCCCAGTATGGCAAACCAACTTGAGATTCTGTACCTGAAGCAATTCACCA
TGAAGATGCCATGATATGCGTAGTGAGCATAGCACGCAGGTTCATATGAG
AATATTTAAATGTATTTGAGACAATTTTTTTCCCCACTTGAGCAACCGAT
GGAATTCTCGTGCAATAAGTTTACCATTTTATCTTTGGCTGATATCTCTA
TACTAACTTATCCTTATTGATATGATTATGAGAAATTAACGAGCACTCTG
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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