FC872910

Overview
NameFC872910
Unique NameFC872910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10100 contig Ccv1_Contig10100:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872910 vs. ExPASy Swiss-Prot
Match: PP351_ARATH (Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 2 
Query:    5 NSRNIFLSPRMGSDLLLVAAGEKSGGYTTANYIWDLMQARKITPSLPAVEAYYTGLKDREVPANDPRLVVVSRAYDNL 238
            N RN FL PR GS+LLL AAGEK+GGYT AN IWDLM AR I P+L AVEAYY GLK+RE+P +DPRL++V+R Y+NL
Sbjct:  356 NERNFFLDPRTGSNLLLKAAGEKTGGYTVANMIWDLMLARNILPTLAAVEAYYKGLKEREIPEDDPRLMLVTRTYNNL 433
The following BLAST results are available for this feature:
BLAST of FC872910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP351_ARATH2.035e-2569.23Pentatricopeptide repeat-containing protein At4g35... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3DC10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872910 ID=FC872910; Name=FC872910; organism=Citrus clementina; type=EST; length=534bp
GGGGAATTCAAGGAACATTTTCTTGAGCCCTAGAATGGGAAGTGACCTCC
TCCTTGTAGCAGCTGGTGAGAAGAGTGGTGGGTATACCACTGCCAATTAT
ATTTGGGATCTCATGCAAGCTCGCAAAATTACCCCATCATTGCCTGCTGT
GGAAGCATATTATACTGGTTTGAAAGATCGGGAGGTACCTGCAAATGATC
CGAGGCTGGTAGTAGTTTCTCGAGCTTACGACAATTTGCTTCGTGGAAGA
CCTGAAGCTGTAAGACAACAGTAGTTGCTGATCCTGAGCTGGATCCAAGG
CGCATGGTTTGGCGATGAAGAATAAATATACTCCCCATAGCATGTCATAA
ATACTTTGTGCTATGCTATGTAGCCTGCAATGTCTCTATTCCGCAGCAGG
ACATCCCAATGCGATAAAGTTTTGATGTTGTTAGTCGGAATTCGTTAATT
CTTCCAATTAGATATTTTACCATCACTCATTACCTATAGAGATACAATTT
TTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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