FC872920

Overview
NameFC872920
Unique NameFC872920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1328..2074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.046e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 268
            QFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1802 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.007e-25
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 268
            QFVTG+PRLP GGLA L+PKLTIVRKH S             +S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1428 QFVTGSPRLPHGGLASLSPKLTIVRKHGS-------------DSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.933e-18
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 268
            QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1916 QFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 268
            QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1407 QFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.685e-16
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 268
            QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1571 QFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of FC872920 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.228e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    5 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 244
            QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2542 QFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
The following BLAST results are available for this feature:
BLAST of FC872920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UPL3_ARATH4.046e-3888.64E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH3.007e-2568.18E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN7.933e-1857.95Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
UFD4_YEAST3.937e-1754.55Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
YDE1_SCHPO5.685e-1652.27Probable ubiquitin fusion degradation protein C12B... [more]
HECD1_HUMAN3.228e-1147.50E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AF09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872920 ID=FC872920; Name=FC872920; organism=Citrus clementina; type=EST; length=747bp
GGGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGGGTTGGCGG
TGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAACTGCACCT
AATACAGCATCAAATGGAACCGGGCCTTCGGAATCAGCGGATGATGACTT
GCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCCTTACTCTA
CCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCGAAGGGCAG
GGATCTTTTGATCTGTCATGAGTTCTCAAAACTAACCGATGGACCTTTGT
ATATTAATATATGTGTCATCAAGTCAATTCTCTTACCTGGGGATTATTCA
TCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCTTTTCACTG
CCCTTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTTTGTTTCAG
GTCAGACTTCAGGCTGCCACAGTGCCACACTCTCTCAACAGAGATTTGAA
GAGGGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGACTTTGTATATA
AATAGGAAACTTAGATTTTTTGTCTTTTTTCCCTCAATTGACAAGTTATT
GGCTGCAGAGTCGACATAACATGTATGGCATAAAAATGATGGGAAGGAAA
AATAAATTGTTGAAATGTTATGCCTTATTTTAAGCTCATATTCTTTTCAA
TTTGAAATCTTTGATTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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