FC872930

Overview
NameFC872930
Unique NameFC872930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10107 contig Ccv1_Contig10107:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872930 vs. ExPASy Swiss-Prot
Match: DSCR3_MOUSE (Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.779e-49
Identity = 105/266 (39.47%), Postives = 159/266 (59.77%), Query Frame = 2
Query:   83 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPT 862
            +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +  ++P  V F IT    Q+ +    LP+  ++    ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + + IQ  Q+ADGD+CRN+++P+Y++ PRL TCPT
Sbjct:    3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYTLRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKERASLPKFFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPT 262          
BLAST of FC872930 vs. ExPASy Swiss-Prot
Match: DSCR3_PONAB (Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.100e-48
Identity = 106/266 (39.85%), Postives = 156/266 (58.65%), Query Frame = 2
Query:   83 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPT 862
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +   SP  V F IT    Q+ +   LLP+  L+    ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFSPSPVHFTITPETLQNARERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPT 262          
BLAST of FC872930 vs. ExPASy Swiss-Prot
Match: DSCR3_HUMAN (Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.450e-48
Identity = 105/266 (39.47%), Postives = 156/266 (58.65%), Query Frame = 2
Query:   83 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPE--LKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPT 862
            + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+ G  +NIQY +  D+ R  L K L+ T EFIV +      +   +P  V F IT    Q+ +   LLP+  L+    ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT
Sbjct:    3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYTLRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPKFLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPT 262          
BLAST of FC872930 vs. ExPASy Swiss-Prot
Match: DSCR3_DICDI (Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.001e-38
Identity = 84/270 (31.11%), Postives = 148/270 (54.81%), Query Frame = 2
Query:   83 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSG-RIGSGTTEVPFSMNLKQHGEENLERFYETFQGADINIQYLVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDTQRH---------PLLPELKSGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTC 856
            + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ Y  +KPI ++  +  +   G +  +G TE+PF   L+    + L   Y+T+ G  +NIQY +  D+ RG L K LS T+EFIVE  +   ++L +     ++ F IT D+  +         P   ++  G +S  C++ +   G + +E++   I S+++ L+R+E+    +    E + IQ  Q+ADGD+ RN  +P+Y++ PRL TC
Sbjct:    3 NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAFYNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQYSIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKADVPTF-KISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTEIQNIQIADGDIWRNFKIPLYMVFPRLFTC 268          
The following BLAST results are available for this feature:
BLAST of FC872930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DSCR3_MOUSE3.779e-4939.47Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_PONAB1.100e-4839.85Down syndrome critical region protein 3 homolog OS... [more]
DSCR3_HUMAN2.450e-4839.47Down syndrome critical region protein 3 OS=Homo sa... [more]
DSCR3_DICDI3.001e-3831.11Down syndrome critical region protein 3 homolog OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3DD10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872930 ID=FC872930; Name=FC872930; organism=Citrus clementina; type=EST; length=864bp
GGGGAGTCCCCCTTCTTCGGGTTCACGGACGTTTGTCCTCCTTCGCGCGT
TTGTCCTGAAGCTCAAGCTCCAGATCGACATGTCGACTGTAGAGATCAAA
CTTTCCCGATCAAACCGCATATATCGGCCTTCTGAACCTCTTCAAGGTAA
AATCGTAATCAAGTCTTCTTCTTCCATTTTTCACTATGGAATTCACCTCA
CCGTTAACGGATCCGCCAATTTGCAGGTTCGAGGAGGATCAGCTGGTGTT
GTTGAGTCTTTGTACGGTGTTATCAAGCCTATTAAAATTCTAAAGAAGAG
CCAAGAGATCAGAACTTCTGGAAGGATTGGTTCAGGTACAACTGAGGTAC
CATTTTCCATGAACCTTAAGCAGCATGGAGAAGAAAATTTAGAAAGATTT
TATGAGACCTTTCAAGGAGCAGATATCAACATCCAGTATTTGGTGACTGT
AGATATAATGAGAGGATACTTACATAAATCACTGTCAGCTACAGTGGAAT
TCATTGTTGAAACTGATAAAGCTGATCTCCTTGAGCGACCAGTTTCTCCT
GAGATGGTTGTCTTTTACATTACTCAGGATACTCAGAGACATCCTTTACT
TCCTGAACTAAAATCAGGAAAAATGTCCACTCAATGTTCCCTGTTGGATC
CCATCACTGGAGAGCTAACGGTTGAAGCATCTTCTGTTCCTATTCACTCC
ATTGACATTCACCTCCTTCGCATGGAGTCGATTCTTTTAGGAGAAAAGAT
TATATCTGAAACCTCTTTGATACAGACAACGCAGGTAGCAGATGGAGATG
TCTGTCGCAACATGACTCTGCCTATATATGTCATACTCCCCCGTCTTTTG
ACTTGTCCAACTGT
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