FC872989

Overview
NameFC872989
Unique NameFC872989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1161 contig Ccv1_Contig1161:1..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872989 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.139e-41
Identity = 89/250 (35.60%), Postives = 147/250 (58.80%), Query Frame = 2 
Query:   77 NAKIIGSGKETLVLAHGFGGDQSIWDKITPVLSQHYRVLAFDWLFSGAILNKDHQSL--YNPVKYSSYEAFADDLITLLEENDLKSTLFIGHSMSGMIGCIASVKKPELFKRLILIGTSPRYIN-TDDYEGGFKPSDIENLISNVETNYASWASSFPRLVVDTKDAPSV-EKFENCLKRMRHEFALPLAKTVFYSDEREILDKVETPCTIVQPSNDAVVPNSVAYYMQEKMKGKSTVEIIEADEHFPQLT 814
            + K+ GSGK +++ A GFG DQS+W+ + P   + +RV+ FD++ SG      H  L  Y+  +Y + + +A D++ + E  DLK T+F+GHS+  +IG +AS+++PELF  L+++G SP Y+N   +Y GGF+   +  L+  +E NY  WA+ F   V++  D P + E+ E+         A   AK  F+SD RE L KV  P  I+Q ++D + P +V  YM + +   S+++ +EA  H P ++
Sbjct:   10 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSG------HSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP-YSSLKQMEARGHCPHMS 252
The following BLAST results are available for this feature:
BLAST of FC872989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU2.139e-4135.60Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BC03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872989 ID=FC872989; Name=FC872989; organism=Citrus clementina; type=EST; length=838bp
CTTTTCTTGCTTCTATCTTTTGGTTTTCCCGGAAGTAAAGATGGTGATAC
GAGAACAAGGTCTATCGGCTGCCATGAACGCAAAAATCATAGGCTCAGGC
AAGGAAACTCTGGTTCTTGCACACGGGTTTGGAGGAGACCAGTCTATTTG
GGACAAAATCACACCCGTTTTGTCTCAGCATTACAGGGTTTTAGCTTTTG
ACTGGCTTTTCTCTGGAGCGATACTAAATAAAGATCATCAAAGCCTTTAT
AATCCTGTCAAGTATTCTTCATACGAAGCTTTTGCCGATGATTTGATAAC
TCTTTTAGAAGAAAATGACTTGAAATCAACCCTGTTCATTGGCCACTCCA
TGTCTGGTATGATTGGTTGCATTGCTTCTGTTAAGAAACCTGAACTCTTT
AAAAGGCTCATACTCATTGGAACTTCTCCTAGGTACATCAACACAGATGA
TTATGAAGGTGGGTTCAAACCTTCGGATATTGAAAATCTCATCTCAAATG
TAGAAACCAATTATGCTAGCTGGGCTTCAAGCTTCCCACGTCTTGTTGTG
GATACTAAAGATGCTCCCTCGGTCGAGAAATTTGAAAACTGCTTGAAAAG
AATGAGACATGAATTTGCTCTTCCTTTGGCCAAAACTGTGTTTTATAGCG
ACGAAAGAGAGATTCTCGACAAGGTCGAGACACCATGCACTATTGTCCAA
CCCAGTAACGATGCTGTTGTGCCGAACTCAGTTGCTTACTACATGCAGGA
GAAGATGAAGGGAAAATCAACGGTGGAGATCATAGAGGCCGATGAACATT
TCCCACAGCTTACTGCTCATCTTCAGCTTATTGATGTG
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