FC872994

Overview
NameFC872994
Unique NameFC872994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:2..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.261e-68
Identity = 114/240 (47.50%), Postives = 163/240 (67.92%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++P+ + GL++W AI TWV +YC+ +Y +D +V++D EIQ+WW E+R  GHGDKR+ SWW  M +RD+LI+  TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+F+P+ GT E AEL  D+D  +LK +  +    L  +++E+LS H++DE+YLGQR S  WT D                    I+ RN + R KNR GP  I Y L++P+T++   +G +TGKGIPNS+SI
Sbjct:  647 LIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.377e-67
Identity = 118/240 (49.17%), Postives = 158/240 (65.83%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L  ++PY + GL++W AI +WV DYCS +Y  ++ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ RKF+P+ GT E  EL  + DK +LK +  +    L  +L+E+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN N  L NR GP    Y L+ P      ++G LTGKGIPNS+SI
Sbjct:  626 LIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 860          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.055e-67
Identity = 118/240 (49.17%), Postives = 159/240 (66.25%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++PY + GL++W AI +WV DYCS +Y  D+ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ R+F+P+ GT E  EL  + DK +LK +  +    L  +LVE+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN +  L NR GP    Y L+ P      ++G LTGKGIPNS+SI
Sbjct:  627 LIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.914e-63
Identity = 106/238 (44.54%), Postives = 160/238 (67.23%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++PY + GL++W  I TWV+DY S++Y  D+ ++ D E+QAWWKE+ EVGHGDK+N  WW +M +R++LI+  +I+IWT+SALHA+VNFGQY+Y G   NRPTL R+F+P++G+ E  EL+    K YLK +  +F   +  +++E+LSRH SDE+YLG+R +  WT D+                 +K+ +RN + +L+NR GP ++ Y L++P +        LT +GIPNSISI
Sbjct:  629 EDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE-----GLTFRGIPNSISI 861          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.034e-62
Identity = 110/241 (45.64%), Postives = 158/241 (65.56%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGR-LTGKGIPNSISI 722
            L +++PY   GL +W AI  WV +YC+I+Y +D  ++ D E+QAWWKE+REVGHGD ++A WW +M S   L +A T +IW +SALHA+VNFGQY YAGY PNRPT+ R+ +P+ G+ E  EL  + +K++++ +  +F   L  +L+E+LS+H++DE+YLGQR + EWT D                   K++  N++  LKNR GPA   Y LM P+TS+ K     +T +GIPNSISI
Sbjct:  623 LIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.303e-62
Identity = 110/238 (46.22%), Postives = 159/238 (66.81%), Query Frame = 3
Query:    9 QNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            +++PY + GL+VW AI +WV+DY  +FYK ++ +++D E+QAWWKE+RE GHGDK++  WW +M +R+ L+++ TI+IW +SALHA+VNFGQY  AGY PNRPT+ R+++P E T E  EL  + DK +LK +  +    L  +L+E+LS H+SDEVYLGQR S EW  ++                 + I ERN +  LKNR G  K+ Y L+ P      ++G +TG+GIPNS+SI
Sbjct:  627 KDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFP-----SSEGGVTGRGIPNSVSI 859          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.675e-61
Identity = 114/245 (46.53%), Postives = 163/245 (66.53%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELL---IDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNV-KNDGR-LTGKGIPNSISI 722
            L +++PY + GL +W AI  WV +Y +I+Y +D  ++ DEE+QAWWKE+REVGHGD ++  WW +M++   L +A TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+ +P+ GT E A+L     ++D  ++  +  +F   L  +L+E+LS+H+SDEVYLGQR + EWT D                   +I + N N+ LKNR GP K+ Y L++P+TS+V K  G+ LT  GIPNSISI
Sbjct:  633 LIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.264e-60
Identity = 108/240 (45.00%), Postives = 156/240 (65.00%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            + +++PY + GL++W AI TWV +Y  ++YK DD+++ D E+QA WKE+ EVGHGDK+N  WW +M +R+ L++A  I+IWT+SALHA+VNFGQY Y G   NRPTL R+F+P++G+ E  EL  +  K YLK +  +F   +  +++E+LSRH SDEVYLG+R +  WT D                   K+ ERN + +L+NR GP ++ Y L+ P +        LT +GIPNSISI
Sbjct:  623 VIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE-----GLTFRGIPNSISI 857          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.155e-60
Identity = 105/240 (43.75%), Postives = 153/240 (63.75%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGRLTGKGIPNSISI 722
            L +++PY + GL++W AI TWV+DY S++Y  D+ +K+D E+Q WWKE+ E GHGD ++  WW ++ + D L++  TI+IWT+SALHA+VNFGQY Y G   NRPTL R+ +P+EGT E  E++  S K YL+ +  +F   +  +++E+LSRH SDEVYLGQR++  WT D                   K+  +N +  L +R GP ++ Y L+HP +        LT +GIPNSISI
Sbjct:  630 LIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE-----GLTFRGIPNSISI 864          
BLAST of FC872994 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.271e-60
Identity = 110/241 (45.64%), Postives = 154/241 (63.90%), Query Frame = 3
Query:    3 LFQNFPYGLHGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHELAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGR-LTGKGIPNSISI 722
            L +++PY   GL++W AI  WV +Y +I+Y DD  ++ D E+QAWW E+REVGHGD + A+WW  M++   L  A T +IW +SALHA+VNFGQY YAGY PNRPT+ R+ +P+ GT    EL  D ++ +++ +  +    +  +L+EVLS+H+SDEVYLGQR +  WT D                   K+V  N +A LKNR GPA+  Y L++P+TS+V      +T KGIPNSISI
Sbjct:  626 LIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRMPEPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
The following BLAST results are available for this feature:
BLAST of FC872994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
LOX5_ARATH1.261e-6847.50Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXA_SOLLC2.377e-6749.17Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU4.055e-6749.17Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_PEA7.914e-6344.54Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_ORYSJ1.034e-6245.64Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_ARATH2.303e-6246.22Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX4_ORYSJ9.675e-6146.53Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_SOYBN1.264e-6045.00Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_PEA2.155e-6043.75Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX3_ORYSJ6.271e-6045.64Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872994 ID=FC872994; Name=FC872994; organism=Citrus clementina; type=EST; length=738bp
TTCTCTTCCAAAATTTTCCCTATGGTTTACATGGACTTGATGTATGGCTT
GCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATGA
TGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATCC
GAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAATG
AACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTTC
GTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGAT
ACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGGA
ACACACGAATTAGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTAA
AATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAAG
TCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATCA
TCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCGG
TGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAATG
CCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTATG
CATCCCGATACATCAAACGTCAAAAACGACGGACGCCTCACAGGAAAAGG
GATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGT
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