FC872998

Overview
NameFC872998
Unique NameFC872998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3127 contig Ccv1_Contig3127:33..677. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 7.579e-69
Identity = 133/177 (75.14%), Postives = 145/177 (81.92%), Query Frame = 2
Query:  113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            R SP G+L +R + Y               +  K  GGGKITDEFTG G++GQVCQVIGAVVDVRFDEGLPPILTALEV DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMN  GEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTG
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTG 207          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.688e-68
Identity = 132/177 (74.58%), Postives = 143/177 (80.79%), Query Frame = 2
Query:  113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            RASPYG+LL+R +EY                     GGGKITDEFTGKG+IGQVCQVIGAVVDVRFDEGLPPILT+LEV DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR          GEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTG
Sbjct:   41 RASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTG 217          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.205e-68
Identity = 133/177 (75.14%), Postives = 146/177 (82.49%), Query Frame = 2
Query:  113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            R SP G+L +R + Y               +   K GGGKITDEFTG G+IGQVCQVIGAVVDVRFDEGLPPILTALEV D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+N  GEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTG
Sbjct:   33 RPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTG 208          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.932e-64
Identity = 131/180 (72.78%), Postives = 143/180 (79.44%), Query Frame = 2
Query:  113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            RASP G LL+R  +Y               S   K G    GKITDEFTG GSIG+VCQVIGAVVDVRFDEGLPPILTALEV D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+N  GE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTG
Sbjct:   40 RASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTG 215          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.341e-57
Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 2
Query:  221 GGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            G G ITDE TG G+IGQVCQ+IGAVVDV+F+EGLPPI+TALEV D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+N  GEPID +G++KT+ YLPIHREAP FV+QATEQQILVTG
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTG 206          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.287e-57
Identity = 114/180 (63.33%), Postives = 138/180 (76.67%), Query Frame = 2
Query:  110 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV+DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN  GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 211          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.287e-57
Identity = 114/180 (63.33%), Postives = 138/180 (76.67%), Query Frame = 2
Query:  110 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV+DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN  GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 211          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.095e-57
Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = 2
Query:  116 ASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            A+P G LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV+DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN  GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG
Sbjct:   41 AAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 214          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45
Identity = 89/126 (70.63%), Postives = 105/126 (83.33%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            GQ+  VIGAVVDV+FDEGLPPIL ALEV+    RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMN  GEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTG
Sbjct:   61 GQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTG 186          
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 2
Query:  266 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643
            G++  VIGAVVDV+FDEGLPPIL ALEV+    RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMN  GEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTG
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTG 186          
The following BLAST results are available for this feature:
BLAST of FC872998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_ORYSJ7.579e-6975.14ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_HEVBR1.688e-6874.58ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE2.205e-6875.14ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_NICPL1.932e-6472.78ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_DAUCA1.341e-5776.60ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBN_ARATH2.287e-5763.33ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH2.287e-5763.33ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH5.095e-5764.04ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPB_RAT1.177e-4570.63ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE3.426e-4569.84ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872998 ID=FC872998; Name=FC872998; organism=Citrus clementina; type=EST; length=645bp
ACCAATGGCTTCACGTAGACTCCTAACATCTCTCCTTCGCTCATCTGTCC
GCCGATCTCCCTCCAAATCTTCGTTTTCTAACTCATCTGTGTTCTCTCCT
GCCTCCACGCGCCGCGCGTCTCCTTATGGGCACCTCCTCTCGCGCGTCTC
AGAGTACGCGACCTCAGCAGCCGCCACTGCCCCACCGGCACAGACTCCGA
AGTCGGATGTAAAGAAAGGCGGCGGTGGTAAAATCACCGATGAGTTTACT
GGAAAGGGCTCGATCGGTCAGGTTTGTCAGGTCATCGGTGCCGTCGTTGA
TGTCAGATTTGACGAGGGGTTGCCTCCGATTTTGACCGCGCTTGAAGTGG
AAGATCACTCGGTTCGGTTAGTGCTTGAGGTGGCTCAGCACATGGGTGAG
GGTGTTGTTAGGACTATTGCTATGGATGGAACTGAAGGGTTGGTTCGTGG
CCAGCGCGTGCTCAATACTGGCTCTCCAATCACTGTACCTGTGGGGAGAG
TTACTCTGGGTCGTATTATGAATGACACTGGAGAGCCTATTGATGAGAAA
GGCGATCTCAAAACTGAACATTACTTGCCCATCCACAGAGAGGCTCCAGC
ATTCGTTGAACAGGCAACTGAACAACAGATTCTAGTCACTGGCAT
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