FC872998
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 7.579e-69 Identity = 133/177 (75.14%), Postives = 145/177 (81.92%), Query Frame = 2 Query: 113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 R SP G+L +R + Y + K GGGKITDEFTG G++GQVCQVIGAVVDVRFDEGLPPILTALEV DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMN GEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTG Sbjct: 32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTG 207
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.688e-68 Identity = 132/177 (74.58%), Postives = 143/177 (80.79%), Query Frame = 2 Query: 113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 RASPYG+LL+R +EY GGGKITDEFTGKG+IGQVCQVIGAVVDVRFDEGLPPILT+LEV DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR GEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTG Sbjct: 41 RASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTG 217
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.205e-68 Identity = 133/177 (75.14%), Postives = 146/177 (82.49%), Query Frame = 2 Query: 113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 R SP G+L +R + Y + K GGGKITDEFTG G+IGQVCQVIGAVVDVRFDEGLPPILTALEV D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+N GEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTG Sbjct: 33 RPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTG 208
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.932e-64 Identity = 131/180 (72.78%), Postives = 143/180 (79.44%), Query Frame = 2 Query: 113 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 RASP G LL+R +Y S K G GKITDEFTG GSIG+VCQVIGAVVDVRFDEGLPPILTALEV D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+N GE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTG Sbjct: 40 RASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTG 215
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 1.341e-57 Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 2 Query: 221 GGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 G G ITDE TG G+IGQVCQ+IGAVVDV+F+EGLPPI+TALEV D +RLVLEVA +GE VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+N GEPID +G++KT+ YLPIHREAP FV+QATEQQILVTG Sbjct: 66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTG 206
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.287e-57 Identity = 114/180 (63.33%), Postives = 138/180 (76.67%), Query Frame = 2 Query: 110 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 R A+P +LL RV+EY S GK T ++ GKG+IG+VCQVIGA+VDVRF+ EGLPPI+T+LEV+DH RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG Sbjct: 36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 211
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.287e-57 Identity = 114/180 (63.33%), Postives = 138/180 (76.67%), Query Frame = 2 Query: 110 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 R A+P +LL RV+EY S GK T ++ GKG+IG+VCQVIGA+VDVRF+ EGLPPI+T+LEV+DH RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG Sbjct: 36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 211
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 5.095e-57 Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = 2 Query: 116 ASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 A+P G LL RV+EY S GK T ++ GKG+IG+VCQVIGA+VDVRF+ EGLPPI+T+LEV+DH RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMN GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TG Sbjct: 41 AAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATG 214
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 1.177e-45 Identity = 89/126 (70.63%), Postives = 105/126 (83.33%), Query Frame = 2 Query: 266 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 GQ+ VIGAVVDV+FDEGLPPIL ALEV+ RLVLEVAQH+GE VRTIAMDGTEGLVRGQ+VL++G+PI +PVG TLGRIMN GEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTG Sbjct: 61 GQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTG 186
BLAST of FC872998 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 3.426e-45 Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 2 Query: 266 GQVCQVIGAVVDVRFDEGLPPILTALEVEDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNDTGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 643 G++ VIGAVVDV+FDEGLPPIL ALEV+ RLVLEVAQH+GE VRTIAMDGTEGLVRGQ+VL++G+PI +PVG TLGRIMN GEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTG Sbjct: 61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTG 186 The following BLAST results are available for this feature:
BLAST of FC872998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872998 ID=FC872998; Name=FC872998; organism=Citrus clementina; type=EST; length=645bpback to top |