FC873081

Overview
NameFC873081
Unique NameFC873081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873081 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 KEKIDQQLKAMST-QPSFL-TXXXXXXXXXXXXXXXXXNKLMPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 216
            KEK++QQLKAM+  QPSF                    NK++P ISYPGVAMWQFMPPA+VDTSQDHVLRPPVA
Sbjct:  161 KEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234
[Close]
BLAST of FC873081 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.740e-16
Identity = 43/72 (59.72%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 KEKIDQQLKAMSTQPSFLTXXXXXXXXXXXXXXXXXNKLMPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 216
            KE+IDQQLKA+ TQP                     +KL+PF +YPG AMWQFMPPAAVDTSQDHVLRPPVA
Sbjct:  156 KERIDQQLKAIKTQPQ-PQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226
The following BLAST results are available for this feature:
BLAST of FC873081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ILR3_ARATH9.551e-1760.81Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH4.740e-1659.72Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CD07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873081 ID=FC873081; Name=FC873081; organism=Citrus clementina; type=EST; length=426bp
AAAGAGAAGATAGATCAGCAACTCAAAGCTATGAGCACACAACCCAGTTT
CTTAACTCCTCCTCCTGCAATCCCTGCTGCATTTGCTGCCCAAGGCCAAG
CACCTGGAAACAAGCTGATGCCTTTCATCAGCTACCCTGGAGTCGCAATG
TGGCAATTCATGCCTCCTGCTGCAGTGGATACCTCACAGGATCATGTACT
CCGTCCTCCGGTTGCTTAAGTATGCAACCTACAATGATTTGGGTTTGCAA
TTTGCACCCAACAAGTGTATTCGTTTTATCATTGTTCTCTGACTGTATTA
GTTTTTCCGAAGTCTTTAATGATTGGTGGGTGACTGTATTTGAATCTCTC
TGTCCTATGGATTGTTGCTGGCTTTTGCATGTAAATTTCAATAAGTTCGT
CTGGCAAAAAAAAAAAAAAAAAAAAA
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