FC873088

Overview
NameFC873088
Unique NameFC873088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15308 contig Ccv1_Contig15308:170..987. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: NCASE_ARATH (Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.113e-71
Identity = 131/214 (61.21%), Postives = 165/214 (77.10%), Query Frame = 1
Query:    1 RQFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTG--ESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYLPQ 636
            +QF+ AV+LFNKA+EKL+GKI Y+H+YLDFS L+VT+PK  GGSETVKTC                    F QGDD+GN FWRLVR++L+ P  EQ+ CQ PKPILLDTGEMK+PYDWAPSILPIQIL++GQLVILSVPGEFTTMAGRRLRDA+K+ + ++   E ++N+HVV+AGLTN+YSQY+ TFEEY+VQRYE ++       L+ Y+ +
Sbjct:  379 KQFKMAVELFNKATEKLQGKIGYQHAYLDFSNLDVTVPKAGGGSETVKTCPAAMGFGFAAGTTDGPGAFDFKQGDDQGNVFWRLVRNVLRTPGPEQVQCQKPKPILLDTGEMKEPYDWAPSILPIQILRIGQLVILSVPGEFTTMAGRRLRDAIKSFLISSDPKEFSNNMHVVIAGLTNTYSQYIATFEEYEVQRYEGASTLYGRHTLTAYIQE 592          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: NCSEB_DICDI (Neutral ceramidase B OS=Dictyostelium discoideum GN=dcd2B PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.464e-47
Identity = 95/213 (44.60%), Postives = 134/213 (62.91%), Query Frame = 1
Query:    4 QFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDK--GNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYLPQ 636
            QF KA++LFN AS ++ G + YRHS++ F+ + V  P  N G +   TC                    F Q D+   GNPFW  + D + KP  +QI CQ PKPILLD G M +P  W P ++PIQI+ +GQ+V+++VPGEFTTM+GRRLR++V+ ++   GES  N  V++AGL+N+YS Y+ TFEEYQVQRYE ++    P  L +Y+ +
Sbjct:  348 QFNKALELFNNASIQVSGPVQYRHSWVQFTNVSVE-PPYNSGVDNATTCRGAMGYSFAAGTTDGPGAFNFVQSDNNTSGNPFWNFIGDFIAKPTPDQIRCQSPKPILLDVG-MVEPIPWVPDVMPIQIVTIGQIVLVAVPGEFTTMSGRRLRNSVREII---GESIENPIVLIAGLSNTYSGYIATFEEYQVQRYEGASTVFGPHTLGSYMQE 555          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: NCSEA_DICDI (Neutral ceramidase A OS=Dictyostelium discoideum GN=dcd2A PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.188e-43
Identity = 90/209 (43.06%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    4 QFRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKG-NPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNY 627
            QF KA++LFN A+ ++ GKI YRH++  F+ + V  P  N G E   TC                    F QGD+   NPFW  +  ++ KP  +Q  CQ PKPIL+D G M +P  W P ++P+QI+ +GQ+V+++VPGEFTTM+GRRLR+ V+ ++   G+S  N  V++AGL N+YS Y+ TFEE+QVQRYE ++    P  L  Y
Sbjct:  343 QFNKALELFNNATIQVSGKIQYRHTWKPFTNVSVEAP-YNSGVEGATTCRGAMGYSFAGGTTDGPGAFNFIQGDNSTTNPFWNFIGGIIAKPTPQQTACQAPKPILIDVG-MVEPIPWVPDVMPLQIITLGQIVLVAVPGEFTTMSGRRLRNTVREII---GQSIENPIVLIAGLANTYSGYIATFEEFQVQRYEGASTVFGPHTLGAY 546          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: ASAH2_RAT (Neutral ceramidase OS=Rattus norvegicus GN=Asah2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.511e-39
Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    7 FRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            ++KA +L   AS+++ G +   H +++ + + V    Q   + TVKTC                     TQG  +GN FW  +RD LL KP +E I CQ PKPIL+ TGE+ +P+ W P I+ IQI+ +G L I ++PGEFTTM+GRRLR+AVK      G    ++ VV+AGL+N Y+ Y+TT+EEYQ QRYE ++    P  LS Y+
Sbjct:  386 YQKAKELHASASQEVTGPVLTAHQWVNMTDVSV----QLNATHTVKTCKAALGYSFAAGTIDGVSGLNITQGTTEGNLFWDTLRDQLLGKPSEEIIECQKPKPILIHTGELTKPHPWQPDIVDIQIVTLGSLAIAAIPGEFTTMSGRRLREAVKKEFALYG--MKDMTVVIAGLSNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYI 588          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: ASAH2_MOUSE (Neutral ceramidase OS=Mus musculus GN=Asah2 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.165e-38
Identity = 83/209 (39.71%), Postives = 123/209 (58.85%), Query Frame = 1
Query:    7 FRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            ++KA +L+  AS+++ G +   H +++ + + V    Q   + TVKTC                     TQG  +G+PFW  +RD LL KP +E + CQ PKPILL +GE+  P+ W P I+ +QI+ VG L I ++PGE TTM+GRR R+A+K      G    ++ VV+AGL+N Y+ Y+TT+EEYQ QRYE ++    P  LS Y+
Sbjct:  381 YQKAKELYASASQEVTGPVLAAHQWVNMTDVSV----QLNATHTVKTCKPALGYSFAAGTIDGVSGLNITQGTTEGDPFWDTLRDQLLGKPSEEIVECQKPKPILLHSGELTIPHPWQPDIVDVQIVTVGSLAIAAIPGELTTMSGRRFREAIKKEFALYG--MKDMTVVIAGLSNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYI 583          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: ASAH2_HUMAN (Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.165e-38
Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 1
Query:    7 FRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            +++A +L+  AS+++ G +   H ++D + + V +      +   KTC                    FTQG  +G+PFW  +RD +L KP +E   C  PKPILL TGE+ +P+ W P I+ +QI+ +G L I ++PGEFTTM+GRRLR+AV+    + G    N+ VV++GL N Y+ Y+TT+EEYQ QRYE ++    P  LS Y+
Sbjct:  405 YQRAKELYASASQEVTGPLASAHQWVDMTDVTVWL----NSTHASKTCKPALGYSFAAGTIDGVGGLNFTQGKTEGDPFWDTIRDQILGKPSEEIKECHKPKPILLHTGELSKPHPWHPDIVDVQIITLGSLAITAIPGEFTTMSGRRLREAVQAEFASHG--MQNMTVVISGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYI 607          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: ASA2C_HUMAN (Putative neutral ceramidase C OS=Homo sapiens GN=ASAH2C PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.165e-38
Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 1
Query:    7 FRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            +++A +L+  AS+++ G +   H ++D + + V +      +   KTC                    FTQG  +G+PFW  +RD +L KP +E   C  PKPILL TGE+ +P+ W P I+ +QI+ +G L I ++PGEFTTM+GRRLR+AV+    + G    N+ VV++GL N Y+ Y+TT+EEYQ QRYE ++    P  LS Y+
Sbjct:  247 YQRAKELYASASQEVTGPLASAHQWVDMTDVTVWL----NSTHASKTCKPALGYSFAAGTIDGVGGLNFTQGKTEGDPFWDTIRDQILGKPSEEIKECHKPKPILLHTGELSKPHPWHPDIVDVQIITLGSLAITAIPGEFTTMSGRRLREAVQAEFASHG--MQNMTVVISGLCNVYTHYITTYEEYQAQRYEAASTIYGPHTLSAYI 449          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: ASAH2_DANRE (Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.902e-37
Identity = 82/209 (39.23%), Postives = 119/209 (56.94%), Query Frame = 1
Query:    7 FRKAVDLFNKASEKLEGKIDYRHSYLDFSQLEVTIPKQNGGSETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRD-LLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            F+ A +L+  A ++L G +   H +++ +   V    Q   + T +TC                    F QGD +G+PFW  +RD +L  P  E   C  PKPIL  TGEM  P  W P+I+ +QI+ +G L +++VPGEFTTM+GRR+R+AVK  +    E  +N  VV+AGL N Y+ Y+TT+EEYQ+QRYE ++    P  LS Y+
Sbjct:  363 FKIAKELYGSAKQELHGPVYGAHQWVNMTDETV----QFNSTHTGRTCKPALGHSFAAGTTDGGGEFNFLQGDTEGDPFWDGIRDAVLGPPSNETKACHQPKPILFSTGEMDSPLPWHPAIVDVQIITIGSLAVVAVPGEFTTMSGRRIREAVKRELEVK-EPFTNAEVVVAGLCNIYTHYITTYEEYQIQRYEGASTIFGPHTLSAYI 566          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: NCASE_DROPS (Neutral ceramidase OS=Drosophila pseudoobscura pseudoobscura GN=CDase PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.279e-31
Identity = 75/218 (34.40%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   16 AVDLFNKASEK-----LEGKIDYRHSYLDFSQLEVTIPKQNGGS--------ETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            A+ L N+ S++     + G + + H ++D       +P  NG +        + ++ C                    F QG    NP W  VRD +  P +E I C  PKPILL TG    PY+W P I+  Q+L++G ++I +VP EFTTMAGRRLR+ ++   +  G    +  V++AGLTN Y+ Y  T EEYQ QRYE ++    P   S Y+
Sbjct:  329 ALGLLNEQSQESTAREVTGDVRFIHQFVD-------MPNYNGSAYNPLSRKIDKIRGCQPAMGYSFAAGTTDGPGAFSFEQGTTTDNPMWNFVRDFIATPTQEDIKCHEPKPILLATGRATFPYEWQPKIVSDQLLKIGDVIIAAVPCEFTTMAGRRLRNQIRAAASAAG--GLDTEVIIAGLTNIYTSYTVTPEEYQAQRYEAASTIFGPHTHSIYM 537          
BLAST of FC873088 vs. ExPASy Swiss-Prot
Match: NCASE_DROME (Neutral ceramidase OS=Drosophila melanogaster GN=CDase PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.279e-31
Identity = 75/218 (34.40%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   16 AVDLFNKASEK-----LEGKIDYRHSYLDFSQLEVTIPKQNGGS--------ETVKTCXXXXXXXXXXXXXXXXXXXXFTQGDDKGNPFWRLVRDLLKKPDKEQINCQYPKPILLDTGEMKQPYDWAPSILPIQILQVGQLVILSVPGEFTTMAGRRLRDAVKTVVTTTGESNSNVHVVLAGLTNSYSQYVTTFEEYQVQRYEVSTWFIPPTCLSNYL 630
            A+ L N+ S++     + G + + H ++D       +P  NG +        + ++ C                    F QG    NP W  VRD +  P +E I C  PKPILL TG    PY+W P I+  Q+L++G ++I +VP EFTTMAGRRLR+ ++   +  G    +  V++AGLTN Y+ Y  T EEYQ QRYE ++    P   S Y+
Sbjct:  329 ALGLLNEQSQESTAREVTGDVRFIHQFVD-------MPNYNGSTYNPLSRKVDKIRGCQPAMGYSFAAGTTDGPGAFSFEQGTTTDNPMWNFVRDFIAAPTQEDIKCHEPKPILLATGRATFPYEWQPKIVSDQLLKIGDVIIAAVPCEFTTMAGRRLRNQIRAAASAVG--GIDTEVIIAGLTNIYTSYTVTPEEYQAQRYEAASTIFGPHTHSIYM 537          
The following BLAST results are available for this feature:
BLAST of FC873088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NCASE_ARATH1.113e-7161.21Neutral ceramidase OS=Arabidopsis thaliana GN=At2g... [more]
NCSEB_DICDI1.464e-4744.60Neutral ceramidase B OS=Dictyostelium discoideum G... [more]
NCSEA_DICDI2.188e-4343.06Neutral ceramidase A OS=Dictyostelium discoideum G... [more]
ASAH2_RAT9.511e-3941.63Neutral ceramidase OS=Rattus norvegicus GN=Asah2 P... [more]
ASAH2_MOUSE6.165e-3839.71Neutral ceramidase OS=Mus musculus GN=Asah2 PE=1 S... [more]
ASAH2_HUMAN6.165e-3838.76Neutral ceramidase OS=Homo sapiens GN=ASAH2 PE=1 S... [more]
ASA2C_HUMAN6.165e-3838.76Putative neutral ceramidase C OS=Homo sapiens GN=A... [more]
ASAH2_DANRE8.902e-3739.23Neutral ceramidase OS=Danio rerio GN=asah2 PE=1 SV... [more]
NCASE_DROPS4.279e-3134.40Neutral ceramidase OS=Drosophila pseudoobscura pse... [more]
NCASE_DROME4.279e-3134.40Neutral ceramidase OS=Drosophila melanogaster GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CE08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873088 ID=FC873088; Name=FC873088; organism=Citrus clementina; type=EST; length=818bp
AGGCAATTTAGAAAAGCTGTAGATCTTTTCAATAAAGCATCCGAAAAATT
AGAAGGAAAGATTGACTATCGTCACAGTTATCTGGACTTCTCCCAGCTTG
AGGTGACAATTCCTAAACAAAACGGAGGATCAGAGACAGTAAAAACATGC
CCTGCTGCTATGGGGTTTGCATTTGCTGCAGGAACAACGGATGGACCAGG
AGCATTTGATTTTACCCAAGGAGATGACAAGGGCAATCCTTTTTGGAGGC
TGGTACGCGACTTACTTAAAAAACCAGATAAGGAACAAATTAATTGTCAG
TACCCAAAGCCCATCTTACTCGATACTGGTGAAATGAAGCAACCATACGA
CTGGGCACCTTCAATACTTCCAATTCAGATCCTCCAAGTAGGGCAGCTAG
TCATTCTTAGTGTACCTGGAGAGTTTACAACAATGGCTGGGAGGCGACTT
CGTGATGCTGTGAAGACGGTGGTCACTACTACTGGTGAATCCAATAGCAA
TGTTCATGTTGTTTTAGCTGGCTTGACTAATTCCTATTCACAGTATGTGA
CTACCTTCGAAGAGTACCAGGTGCAGAGATACGAGGTCAGTACTTGGTTT
ATACCACCAACATGCTTGAGTAATTATCTTCCACAATTGTCATAGCACTA
AGTACAACATACTCAATGAATTCATCAATTGCTCCATCTGCAAAAGTTAT
TATCTGTTATGACATACTTATCTTTCTCTCGGAGATGGAAGAATAGAACA
AAGAACGGGATTGTTGGCCGCATGCCAACGCCATACATATCTGGGTACCA
AAATACTTTTTTGCTGCC
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