FC873158

Overview
NameFC873158
Unique NameFC873158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length799
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873158_ssr45 microsatellite FC873158_ssr45:45..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1074 contig Ccv1_Contig1074:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873158 vs. ExPASy Swiss-Prot
Match: Y3684_ARATH (Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.099e-51
Identity = 101/177 (57.06%), Postives = 128/177 (72.32%), Query Frame = 2 
Query:  263 KNSSELEADTKQRIKLEKYSSESEEQEGNSRKWLKDYFDEAKDMIKSDGGPPRWFSPLECGSHNRNSRSPLLLFLPGIDGVGLGLIRQHQRLGEIFDVWCLHIPVTDRTSFTGLLKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTI 793
            KN+ E  A   + +  E   S+ E    + +K L D+ +EA++ +   GGPPRWFSPLECG+   NS  PLLL+LPGIDG GLGLIR H++LGEIFD+WCLHIPV+DRT    L+KLIE T++SEN R  NRP+YLVGES+GACLAL VAARNP++DL LIL NPAT     ++Q +
Sbjct:   56 KNNDENRATVAKVV--ENPYSKVEAARPDLQKRLSDFLEEAREFVGDGGGPPRWFSPLECGAQATNS--PLLLYLPGIDGTGLGLIRHHKKLGEIFDIWCLHIPVSDRTPVKDLVKLIEETVKSENFRLPNRPIYLVGESIGACLALDVAARNPNIDLSLILVNPATHVNNFMVQPL 228
[Close]
BLAST of FC873158 vs. ExPASy Swiss-Prot
Match: Y1457_ARATH (Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.172e-48
Identity = 94/180 (52.22%), Postives = 125/180 (69.44%), Query Frame = 2 
Query:  260 EKNSSELEADTKQRIKLEKYSSESEEQEGNSRKWLKDYFDEAKDMIKSDGGPPRWFSPLECGSHNRNSRSPLLLFLPGIDGVGLGLIRQHQRLGEIFDVWCLHIPVTDRTSFTGLLKLIERTIRSENCRSSNRPVYLVGESLGACLALAVAARNPDMDLVLILANPATSFRKSLLQTIMP 799
            +K ++E+    K + K+     E    +G   K +KDYF  AK+++K+DGGPPRWFSP++CG    ++  P LLFLPG+DG G+GL+  H+ LG+ F V CLHIPV DRT F GLLK++E  +R E     N+P+YLVG+S G CLALAVAARN  +DLVLIL NPATSF +S LQ ++P
Sbjct:   58 QKGANEVNGKGKSKRKIVSDEIELLWDDGYGSKSVKDYFAAAKEILKADGGPPRWFSPVDCGRPVEDA--PTLLFLPGMDGTGMGLVPHHKALGKAFHVSCLHIPVLDRTPFEGLLKVVEDVLRQEQATRPNKPIYLVGDSFGGCLALAVAARNRSLDLVLILVNPATSFDRSPLQPLLP 235
The following BLAST results are available for this feature:
BLAST of FC873158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3684_ARATH2.099e-5157.06Acyltransferase-like protein At3g26840, chloroplas... [more]
Y1457_ARATH2.172e-4852.22Acyltransferase-like protein At1g54570, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AD04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873158 ID=FC873158; Name=FC873158; organism=Citrus clementina; type=EST; length=799bp
CAATAATTTCACGAGAGCGCTGAGCGCCGCAGGGCAAAACGAATAGAGAG
AGAGTAGTTGTAGTTAGTTCTCCATGACGACGGCCGTTGGAGCTTGTGTA
TTCTCAGCCGATTCATCGCTGGCGTTCCGGTGGGACATGACGCCGTCATC
GTCCGGGAAAGCAAAACGAAATCCGATGTCAAAGCGACTGGCGGTGCCCA
CAGCAACAGCAACGACACGGAAAATCGAAACGACGTCGAAGACGATGAGG
AGCTTTGTGGAGAAGAATAGTAGCGAACTAGAAGCTGACACGAAACAGAG
AATTAAATTGGAAAAATATTCGTCGGAGTCTGAAGAACAAGAAGGTAACA
GCAGGAAGTGGTTGAAAGATTATTTTGATGAAGCAAAAGATATGATCAAA
TCGGACGGTGGACCGCCTCGGTGGTTCTCCCCCTTAGAGTGTGGGTCCCA
CAACCGTAATTCTCGTTCTCCTCTCCTCCTCTTTTTACCTGGGATTGATG
GTGTTGGTCTTGGACTAATAAGGCAGCATCAAAGACTTGGAGAGATATTT
GATGTATGGTGCTTGCATATTCCAGTTACAGATCGGACATCATTTACAGG
TCTACTGAAGCTGATTGAAAGAACTATAAGGTCAGAGAATTGCCGTTCAT
CAAATAGACCTGTCTATCTTGTTGGAGAATCTTTAGGAGCATGCCTTGCA
CTAGCTGTTGCAGCCCGTAATCCTGATATGGATCTTGTGCTAATTCTGGC
TAACCCAGCTACATCTTTTCGGAAGTCATTGTTGCAAACCATAATGCCT
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