FC873161

Overview
NameFC873161
Unique NameFC873161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873161_ssr17 microsatellite FC873161_ssr17:17..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1075 contig Ccv1_Contig1075:1..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.724e-80
Identity = 143/216 (66.20%), Postives = 172/216 (79.63%), Query Frame = 2
Query:  173 MGGRCSKFSICWFHCHLKSSVLESSDLDSGGKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG*SYRTNL 820
            MG   SK S          S  + + LD  G+ +   +P F EFS++ +R AT  F+ +NIVSEHGE++PN+VYKGKL+N R +AVKRF++ +WPDSRQFLEEAKAVG LR+ R+ANL+GCCYE +ERLL+AEFMPNETLAKHLFHWE+QPMKWAMRLRVAL++AQALEYC+SKGRALYHDLNAYR+LFD D NPRLS  GL +NSRDG SY TNL
Sbjct:    1 MGCEVSKLSALCCVSESGRSNPDVTGLDEEGRGESNDLPQFREFSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLENQRRIAVKRFNRKSWPDSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMKNSRDGKSYSTNL 216          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.239e-70
Identity = 125/187 (66.84%), Postives = 150/187 (80.21%), Query Frame = 2
Query:  260 GGKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG*SYRTNL 820
            GG      +PSF+EFS   L+ AT +FS DNIVSE GEK+PN+VYKG+L N RW+AVK+F+K  WP+ +QF EEA  VG LR  RLANLIG C + DERLLVAEFMPN+TLAKHLFHWE Q ++WAMRLRV  Y+A+AL+YCS++GR LYHDLNAYR+LFD+DG+PRLS  GL +NSRDG SY TNL
Sbjct:   47 GGGGGGGGIPSFSEFSFADLKAATNNFSSDNIVSESGEKAPNLVYKGRLQNRRWIAVKKFTKMAWPEPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNL 233          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.882e-44
Identity = 91/193 (47.15%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  215 CHLKSSVLE-----SSDLDSGGKNDRQTVPSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDKDGNPRLSSLGL 778
            C+  SS ++     ++D  S  +N     P  T+FS   L+TAT  FSP+NIVS+   ++ ++V+KG+L N  +VA+KRF+   W D + FLEEA+ VG LR +RL NLIG C + D+R LVA+FM N+TLAK LF  + Q M W++RLRVA ++A+AL+YC++ G A Y++L+AY++LFD+DG+  LS  GL
Sbjct:    4 CYSLSSTVDPVQDHTTDASSEPRNGGGEDPPLTKFSFSALKTATNHFSPENIVSD---QTSDVVFKGRLQNGGFVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQRKYQTMDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGL 193          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 65/184 (35.33%), Postives = 96/184 (52.17%), Query Frame = 2
Query:  287 PSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFH--WETQPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG 799
            P+   FS  +L++AT +F PD+++ E G      V+KG +D              +AVK+ ++  W   +++L E   +G      L  LIG C E + RLLV EFMP  +L  HLF      QP+ W +RL+VAL  A+ L +  SS+ R +Y D     IL D + N +LS  GL   ++DG
Sbjct:   51 PNLKSFSFAELKSATRNFRPDSVLGEGGF---GCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGL---AKDG 228          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  287 PSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGL 778
            P+   F+  +L+ AT +F PD+++ E G      V+KG +D              VAVK+     +   +++L E   +G L    L  L+G C E + RLLV EFMP  +L  HLF    QP+ WA+R++VA+  A+ L +   +K + +Y D  A  IL D + N +LS  GL
Sbjct:   66 PNLKAFTFNELKNATRNFRPDSLLGEGGF---GYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQVIYRDFKAANILLDAEFNSKLSDFGL 237          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.277e-21
Identity = 61/175 (34.86%), Postives = 90/175 (51.43%), Query Frame = 2
Query:  287 PSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGL 778
            P+   F+  +L+ AT +F  DN++ E G      V+KG +D              VAVK+     +   +++L E   +G L    L  L+G C E + RLLV EFMP  +L  HLF    QP+ WA+R++VA+  A+ L +   +K + +Y D  A  IL D D N +LS  GL
Sbjct:   69 PNLKAFTFNELKNATKNFRQDNLLGEGGF---GCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQVIYRDFKAANILLDADFNAKLSDFGL 240          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRWVAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKG--RALYHDLNAYRILFDKDGNPRLSSLGL 778
            F+  +L++AT DF P N + E G      VYKGKL++ R VAVK  S  +     QF+ E  A+  ++   L  L GCCYE + RLLV E++PN +L + LF  +T  + W+ R  + L +A+ L Y   +   R ++ D+ A  IL D    P++S  GL
Sbjct:  681 FTYSELKSATQDFDPSNKLGEGGFGP---VYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPKVSDFGL 838          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.891e-21
Identity = 61/184 (33.15%), Postives = 95/184 (51.63%), Query Frame = 2
Query:  287 PSFTEFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWET--QPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG 799
            P+   F+  +L+ AT +F PD+++ E G  S   V+KG +D              +AVK+ ++  W   +++L E   +G      L  LIG C E + RLLV EFMP  +L  HLF   +  QP+ W +RL+VAL  A+ L +  +++   +Y D     IL D + N +LS  GL ++   G
Sbjct:   52 PNLKSFTFAELKAATRNFRPDSVLGEGGFGS---VFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTG 232          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.005e-20
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = 2
Query:  302 FSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLFHWET--QPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG 799
            FSL +L++AT +F PD++V E G      V+KG +D              +AVKR ++  +   R++L E   +G L    L  LIG C E + RLLV EFM   +L  HLF   T  QP+ W  R+R+AL  A+ L +  +++ + +Y D  A  IL D + N +LS  GL   +RDG
Sbjct:   56 FSLSELKSATRNFRPDSVVGEGGF---GCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHNAQPQVIYRDFKASNILLDSNYNAKLSDFGL---ARDG 228          
BLAST of FC873161 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.951e-20
Identity = 71/209 (33.97%), Postives = 106/209 (50.72%), Query Frame = 2
Query:  221 LKSSVLESSDLDSGGKNDRQTVPSFT--EFSLQQLRTATCDFSPDNIVSEHGEKSPNIVYKGKLDNDRW----------VAVKRFSKFNWPDSRQFLEEAKAVGNLRSERLANLIGCCYEADERLLVAEFMPNETLAKHLF---HWETQPMKWAMRLRVALYLAQALEYC-SSKGRALYHDLNAYRILFDKDGNPRLSSLGLYENSRDG 799
            L  S  +SS   +  K + + + S T   FS  +L+ AT +F  D++V E G      V++G LD              +AVKR +   +   R++L E   +G L    L  LIG C E ++RLLV EFM   +L  HLF   + + +P+ W +R++VAL  A+ L +  S   + +Y D+ A  IL D D N +LS  GL   +RDG
Sbjct:   20 LHLSSCKSSSSATAHKTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGF---GCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNILLDSDFNAKLSDFGL---ARDG 222          
The following BLAST results are available for this feature:
BLAST of FC873161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
Y5126_ARATH1.724e-8066.20Probable serine/threonine-protein kinase At5g41260... [more]
Y4523_ARATH1.239e-7066.84Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH9.882e-4447.15Probable inactive receptor-like kinase SSP OS=Arab... [more]
APK1A_ARATH8.141e-2235.33Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK2B_ARATH1.063e-2134.29Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK2A_ARATH5.277e-2134.86Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5614_ARATH6.891e-2137.27Probable LRR receptor-like serine/threonine-protei... [more]
APK1B_ARATH6.891e-2133.15Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
NAK_ARATH2.005e-2036.87Probable serine/threonine-protein kinase NAK OS=Ar... [more]
Y3545_ARATH9.951e-2033.97Probable receptor-like protein kinase At3g55450 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AD07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873161 ID=FC873161; Name=FC873161; organism=Citrus clementina; type=EST; length=822bp
TTATTTGACCGAGCGCAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGGGAG
AGACCTATAGTCCTACAGAGTGTTTTCGGTTTTCGGAGTTGCAGTTGCAC
GGAAGCAATGCCATACCGTCTGATCATTTGAAAAGCTTCTGATCGTTTGT
CCACCGTCTAATTTTTAATCAAATGGGGGGCCGTTGTTCCAAGTTTTCCA
TTTGCTGGTTCCACTGCCATCTCAAGTCTTCCGTCCTTGAATCCTCCGAT
CTCGACAGTGGGGGCAAAAACGACCGGCAAACAGTTCCGAGTTTCACTGA
GTTCAGCTTACAGCAACTGAGAACTGCCACGTGTGATTTCTCCCCCGACA
ACATAGTATCGGAACACGGTGAAAAATCTCCCAACATTGTTTACAAAGGG
AAGCTCGATAATGACCGTTGGGTCGCCGTTAAACGGTTCAGCAAATTCAA
CTGGCCCGATTCTCGCCAATTCCTCGAGGAGGCAAAGGCAGTGGGGAATT
TAAGGAGTGAGAGACTGGCGAATCTGATTGGTTGTTGCTATGAAGCCGAT
GAGAGATTGCTAGTCGCCGAGTTCATGCCGAATGAAACTCTTGCAAAACA
TCTCTTTCATTGGGAGACCCAGCCCATGAAATGGGCAATGAGGCTGAGGG
TGGCACTCTATTTGGCACAAGCTCTAGAATATTGCAGCAGCAAAGGGAGA
GCATTGTACCATGATCTCAATGCCTACAGAATCTTATTTGATAAGGATGG
CAATCCCAGGCTTTCTTCCCTTGGCCTTTATGAAAATAGTAGAGACGGGT
AAAGTTACCGCACTAACTTGGC
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