FC873181

Overview
NameFC873181
Unique NameFC873181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 338.576 bits (867), Expect = 1.148e-92
Identity = 167/178 (93.82%), Postives = 174/178 (97.75%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DLKKE+YLRKSYCTFLQDLGMRLKVPQVTIATAI+FCHRFF+RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVI++SYEIIHKKD+ A QRI+ QKEVYEQQKELILLGERVVL TLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct:   56 DLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIK-QKEVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 232          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 2.829e-91
Identity = 165/178 (92.70%), Postives = 173/178 (97.19%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DLKKE+YLRKSYCTFLQDLGMRLKVPQVTIATAI+FCHRF++RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVI+VSYEIIHKKD  A QRI+ QKEVY+QQKELILL ERVVLATLGFDLNVHHPYKPLVEAI+KFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct:   55 DLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIK-QKEVYDQQKELILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 231          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.075e-90
Identity = 164/178 (92.13%), Postives = 172/178 (96.63%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHA+NDRRTIATVCMFLAGKVEETPRPLKDVI+VSYEIIHKKD T  Q+I+ QKEVYEQQKELIL GE++VL+TLGFD NV+HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct:   52 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIK-QKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 228          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 1.552e-89
Identity = 164/178 (92.13%), Postives = 171/178 (96.07%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVI VSYEII+KKD  A Q+I+ QKEVYEQQKELIL GE++VL+TLGFDLNV+HPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL
Sbjct:   52 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKDPGASQKIK-QKEVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 228          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 3.043e-69
Identity = 134/180 (74.44%), Postives = 149/180 (82.78%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKV--AQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DLK ET LR SYCTFL+ LG RLKVPQVTIATAI FCHRFF+RQSHAKNDR+TIATVCM LAGKVEETP  L+DVII SYE IHKKD    QR    KEVY+QQKEL+L+GE +VL+TL FDL + HPYKPLVEAIKK+ V  A+  LAQ AWNFVND LRT+LCLQ++PHHIAAGAI L
Sbjct:   50 DLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQR----KEVYDQQKELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVEDAKTQLAQFAWNFVNDCLRTTLCLQYQPHHIAAGAILL 225          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 8.596e-56
Identity = 101/175 (57.71%), Postives = 142/175 (81.14%), Query Frame = 2
Query:   11 KETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            KE  LR +YC+F++D+G+RL++PQVTIATA + CHRF++RQSHAKN+ +T+ATVC+FLA K+E+TP PL+ VIIV+YE +++KD  A  RI  QKEV E+QKELIL+GE ++L+T+ FD N+ HPY+PL  A+KK  + Q  + QVA N +ND +RT+L +QFKPH+IAAG+++L
Sbjct:   31 KEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHRI-YQKEVLEKQKELILVGETLLLSTIRFDFNIQHPYEPLKLALKKLGIFQMEVKQVAVNLINDAIRTTLVVQFKPHYIAAGSLYL 204          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.266e-55
Identity = 99/174 (56.90%), Postives = 142/174 (81.61%), Query Frame = 2
Query:   14 ETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            E+ +R+ YC+F++D+G+RLK+PQ+TIATAI+FCHRF++ QS AKN  +TIATVC+FLA KVE+TP PL  VI V+Y  ++++D    +RI  QK+V+E+QK LIL GER+VL T+ FD N+ HPY+PL++A++K  ++Q  + QVAWNFVND L+T+LCLQ+KP +IAAG+++L
Sbjct:   41 ESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRI-HQKDVFEKQKALILTGERLVLTTVRFDFNIQHPYRPLLDAMEKLGISQKEVKQVAWNFVNDWLKTTLCLQYKPQYIAAGSLYL 213          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 9.526e-47
Identity = 96/178 (53.93%), Postives = 126/178 (70.79%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            DL KE++LR SYCTFLQ LGM+L V QVTI+ A++ CHRF++RQSHAKND +TIAT  +FLA K E+ P  L  V++ SYEII++ D +A  RI  Q E Y + KE+IL GE ++L+T  F L++  PYKPL  A+ +   A   LA  AWNFV+D +RT+LCLQ+KPH IA   + L
Sbjct:   53 DLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASYEIIYEWDPSASIRI-HQTECYHEFKEIILSGESLLLSTSAFHLDIELPYKPLAAALNRLN-AWPDLATAAWNFVHDWIRTTLCLQYKPHVIATATVHL 228          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.594e-44
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 2
Query:    2 DLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNA--LAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFL 535
            +LK+ET+ R SY +FLQ+LG RL  PQ TIATAI+ C RFF RQS  KND +T+A +CMF+AGKVE +PRP  DV+ VSY ++  K+          ++V+E+ K  +L GE++VL+TL  DL + HPYK +++ +K+    ++   L Q A+NFVND LRTSLCLQF P  IA+ AI++
Sbjct:   26 NLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPL--------RDVFERLKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLRTSLCLQFGPSQIASAAIYI 197          
BLAST of FC873181 vs. ExPASy Swiss-Prot
Match: CG1C_SCHPO (Cyclin pch1 OS=Schizosaccharomyces pombe GN=pch1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 2
Query:    5 LKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIIVSYEIIHKKDSTAPQRIRQQKEVYEQQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGA 526
            L +E   R   C F+ ++G+RLK+PQ  +ATA I+ HRF++R S        +A  C+FLA KVE++ R L+D++I   ++  K  +     + +Q + Y + +++IL  E V+L  L FD  V HPY  ++  IKKF      + +VAW ++ND  R+  CL + P  IAA A
Sbjct:   37 LDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVL---VDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVADDKNVTKVAWTYINDSTRSIACLLYSPKTIAAAA 207          
The following BLAST results are available for this feature:
BLAST of FC873181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CCT13_ORYSJ1.148e-9293.82Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ORYSJ2.829e-9192.70Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT14_ARATH1.075e-9092.13Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT15_ARATH1.552e-8992.13Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT12_ARATH3.043e-6974.44Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCT11_ORYSJ8.596e-5657.71Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ4.266e-5556.90Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ARATH9.526e-4753.93Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
CCT11_ARATH2.594e-4450.00Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
CG1C_SCHPO9.904e-2836.78Cyclin pch1 OS=Schizosaccharomyces pombe GN=pch1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AE10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873181 ID=FC873181; Name=FC873181; organism=Citrus clementina; type=EST; length=537bp
TGACTTGAAGAAGGAGACATATTTGCGCAAATCATACTGTACCTTTTTGC
AGGATTTGGGCATGAGGCTGAAAGTACCCCAGGTAACTATAGCTACAGCA
ATAATTTTTTGTCATCGGTTCTTCATTCGTCAATCACATGCAAAGAATGA
CAGAAGGACCATTGCTACTGTGTGTATGTTCCTTGCTGGGAAAGTCGAGG
AGACCCCTCGTCCACTAAAGGATGTTATTATTGTTTCTTATGAGATTATA
CACAAGAAGGACTCCACTGCACCTCAGAGGATCAGACAACAGAAGGAGGT
ATATGAACAACAAAAGGAGCTTATTTTACTTGGTGAGAGGGTTGTACTTG
CCACTTTAGGATTTGACCTAAATGTTCATCATCCTTATAAACCCCTTGTT
GAAGCAATAAAGAAATTCAAGGTTGCGCAGAACGCCCTTGCTCAAGTTGC
TTGGAACTTTGTGAATGATGGGCTGAGGACTTCGCTCTGCCTGCAATTTA
AGCCTCATCATATTGCGGCAGGTGCCATTTTCCTTGC
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