FC873190

Overview
NameFC873190
Unique NameFC873190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14508 contig Ccv1_Contig14508:286..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.251e-54
Identity = 100/114 (87.72%), Postives = 111/114 (97.37%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343
            KED IAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR SRGF+V
Sbjct:   74 KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.905e-53
Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343
            K+D IAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V
Sbjct:   74 KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.575e-50
Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343
            KE  I VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SRGFRV
Sbjct:   71 KEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.494e-45
Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343
            K+  IAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+R SRGF+V
Sbjct:   74 KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            +E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++
Sbjct:   75 RENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 2
Query:   17 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++
Sbjct:   80 AVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            ++++IAVVVGT+TDD R++E+P LKV ALR TE AR RI KAGGE +TF++LA  +P G  TVL++G +NAREAVKHFGPAPGVPHSHTKP VRSKGRKFERARG+R S G++
Sbjct:   75 RKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            +E+ IAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++
Sbjct:   75 RENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            +E+ IAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++
Sbjct:   75 RENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187          
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 2
Query:    2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340
            +E+  AVVVGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++
Sbjct:   75 RENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187          
The following BLAST results are available for this feature:
BLAST of FC873190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL182_ARATH2.251e-5487.7260S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH1.905e-5386.8460S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR2.575e-5085.9660S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH2.494e-4577.39Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_IXOSC2.335e-4373.4560S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_TIMBA1.416e-4073.1560S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_LYSTE4.121e-4069.0360S ribosomal protein L18 OS=Lysiphlebus testaceip... [more]
RL18_ORENI9.181e-4068.1460S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO9.181e-4068.1460S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_MOUSE1.199e-3969.0360S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DC11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873190 ID=FC873190; Name=FC873190; organism=Citrus clementina; type=EST; length=629bp
CAAGGAGGACAACATTGCTGTGGTTGTTGGAACAGTCACTGATGATATTC
GTGTGTATGAAGTTCCTGCACTCAAGGTTACTGCACTGAGGTTCACAGAG
ACAGCAAGGGCAAGAATTGAGAAGGCAGGGGGAGAATGCTTGACATTTGA
CCAACTGGCTCTTCGTGCTCCTTTGGGTCAGAACACGGTTCTCCTGAGAG
GTCCGAAGAATGCTCGTGAGGCTGTCAAGCACTTTGGACCTGCTCCTGGT
GTACCACACAGCCACACCAAACCCTATGTGCGATCTAAGGGAAGAAAATT
TGAGAGGGCTAGAGGAAAAAGGAACAGCAGAGGCTTCAGGGTTTGAGATG
CAGAACTCATTCATAAGGATACAGAGCAGCCGACCACCTTATGCAAATGT
TGTGTTTTCTTTTTTTCTCCTTGCTATTTTAAATCTCTTGGGACAATATC
TTAGCAAGTTATATTTGGATTTTTGGATTTTTTTTTGTTTGAGACAGATC
TTGGATGTCCTTCGGGGCTTGATGTTTAGAAGTGAAGACAGGATGCCTCA
TTTAAAAGTTGCCCAAGTTCTACACACATACATGCATGCCTAGTTGAATT
AAAATGAACCATGAGAACTGGTTTTAGTT
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