FC873190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2) HSP 1 Score: 211.846 bits (538), Expect = 2.251e-54 Identity = 100/114 (87.72%), Postives = 111/114 (97.37%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343 KED IAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR SRGF+V Sbjct: 74 KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.905e-53 Identity = 99/114 (86.84%), Postives = 110/114 (96.49%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343 K+D IAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR SRGF+V Sbjct: 74 KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKRKSRGFKV 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 2.575e-50 Identity = 98/114 (85.96%), Postives = 105/114 (92.11%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343 KE I VVVG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SRGFRV Sbjct: 71 KEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3) HSP 1 Score: 181.8 bits (460), Expect = 2.494e-45 Identity = 89/115 (77.39%), Postives = 99/115 (86.09%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV 343 K+ IAV+VGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL P +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR G+K E ARG+R SRGF+V Sbjct: 74 KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGRRRSRGFKV 188
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43 Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 +E+ IAVVVGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFERARG+R SR ++ Sbjct: 75 RENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARGRRKSRRYK 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40 Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 2 Query: 17 AVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 AV+VGTVTDD R++E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFERARG+R S G++ Sbjct: 80 AVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFERARGRRRSCGYK 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_LYSTE (60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.121e-40 Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 ++++IAVVVGT+TDD R++E+P LKV ALR TE AR RI KAGGE +TF++LA +P G TVL++G +NAREAVKHFGPAPGVPHSHTKP VRSKGRKFERARG+R S G++ Sbjct: 75 RKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEIITFEKLAEISPTGNKTVLMQGRRNAREAVKHFGPAPGVPHSHTKPLVRSKGRKFERARGRRKSCGYK 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40 Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 +E+ IAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++ Sbjct: 75 RENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 9.181e-40 Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 +E+ IAVVVGTVTDD+R+ ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE +HFG APG PHSHTKPYVRSKGRKFERARG+R S G++ Sbjct: 75 RENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 187
BLAST of FC873190 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39 Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 2 Query: 2 KEDNIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFR 340 +E+ AVVVGTVTDD+R+ EVP LKV ALR + AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+ RE +HFG APG PHSHTKPYVRSKGRKFERARG+R SRG++ Sbjct: 75 RENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 187 The following BLAST results are available for this feature:
BLAST of FC873190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873190 ID=FC873190; Name=FC873190; organism=Citrus clementina; type=EST; length=629bpback to top |