FC873194

Overview
NameFC873194
Unique NameFC873194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.546e-63
Identity = 117/142 (82.39%), Postives = 132/142 (92.96%), Query Frame = 2
Query:    2 NSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGL--APRAMEKSKIR 421
            N+LATT KN+DEVDG+PG GALF+KVSMDGAPYLRKVDLR+YTNYGELSSALEKMF+ FT+GQCGS+ A G++MLSE+KLKDLL+G +YVLTYEDKDGDWMLVGDVPWEMFID CK+LKIMKG DAIGL  APRAMEKSK+R
Sbjct:  196 NTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.600e-60
Identity = 109/135 (80.74%), Postives = 124/135 (91.85%), Query Frame = 2
Query:   11 ATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSK 415
            ++TSKN DEVDGKPG G LF+KVSMDGAPYLRKVDLRTYT+Y +LSSALEKMFSCFT+GQCG H A GRE +SE KLKDLLHGSE+VLTYEDKDGDWMLVGDVPWE+F ++C++LKIMKGSD+IGLAP A+EKSK
Sbjct:  182 SSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSK 316          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.167e-49
Identity = 95/137 (69.34%), Postives = 112/137 (81.75%), Query Frame = 2
Query:   20 SKNNDEVDGKPGPG--ALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            +   +E + K GP    L++KVSM+GAPYLRK+DL+TY +Y ELSSALEKMFSCFTIGQ GSH   GR+ L+ES+L DLL GSEYV+TYEDKD DWMLVGDVPWEMFI SCK+L+IMK S+AIGLAPR MEK + RN
Sbjct:  169 NSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.087e-48
Identity = 99/140 (70.71%), Postives = 111/140 (79.29%), Query Frame = 2
Query:   23 KNNDEVDG---KPGPGAL---FIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            K  D  DG   K G GA    F+KVSMDGAPYLRKVDL+ Y +Y ELS ALEKMFS FTIG CGSH   G   ++ESK+ DLL+GSEYV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct:  141 KGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.708e-47
Identity = 91/138 (65.94%), Postives = 107/138 (77.54%), Query Frame = 2
Query:   11 ATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            A   K++ E    P  G L++KVSMDGAPYLRKVDL+ Y NY ELS ALEKMFSCFT+G   S+   GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVPW MF DSC+RL+IMKGSDA+GLAPRA +KSK RN
Sbjct:  129 ALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.819e-43
Identity = 86/143 (60.14%), Postives = 108/143 (75.52%), Query Frame = 2
Query:   20 SKNNDEVDGKPGPGA--------LFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            ++ ND+  G  G  +         ++KVSMDGAPYLRK+DL+ Y  Y +LS+AL KMFS FTIG  G      ++ ++ESKL DLL+GS+YV TYEDKDGDWMLVGDVPWEMF+DSCKR++IMKGS+AIGLAPRA+EK K R+
Sbjct:   96 TEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.152e-42
Identity = 88/143 (61.54%), Postives = 105/143 (73.43%), Query Frame = 2
Query:    2 NSLATTSKNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAI--GLAPRAMEKSKIRN 424
            N LA      +E +    P A F+KVSMDGAPYLRKVDL+ Y +Y ELS +L KMFS FT G C S     ++ ++ESKL DLL+ S+YV TYEDKDGDWMLVGDVPWEMF++SCKRL+IMKG +AI  GLAPRAM K K R+
Sbjct:  103 NMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.717e-42
Identity = 91/143 (63.64%), Postives = 109/143 (76.22%), Query Frame = 2
Query:    2 NSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            N++AT     + ++ + K G G L++KVSMDGAPYLRKVDL+TY NY +LS+ALEKMF  FT G+ G         LSES+ KD     EYVLTYEDKDGDWMLVGDVPWEMF +SC+RL+IMKGSDAIGLAPRA++KSK RN
Sbjct:  129 NTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.172e-41
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 2
Query:   32 DEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            +E     G    F+KVSMDGAPYLRKVDL+ YT+Y +LS AL KMFS FT+G  G+      + ++ESK+ DLL+ SEYV +YEDKDGDWMLVGDVPW MF++SCKRL+IMKGS+AIGLAPRAMEK K R+
Sbjct:  100 EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of FC873194 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.837e-41
Identity = 89/143 (62.24%), Postives = 103/143 (72.03%), Query Frame = 2
Query:    2 NSLATTS--KNNDEVDGKPGPGALFIKVSMDGAPYLRKVDLRTYTNYGELSSALEKMFSCFTIGQCGSHEAPGREMLSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLKIMKGSDAIGLAPRAMEKSKIRN 424
            N++AT     N ++VD K G G L++KVSMDGAPYLRKVDL+TY NY ++S  LEKMF  F+ G+ G+              KD     EYVLTYEDKDGDWMLVGDVPWEMF DSC+RL+IMKGSDAIGLAPRA EKSK RN
Sbjct:  136 NTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQ-----------KD----GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263          
The following BLAST results are available for this feature:
BLAST of FC873194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA9_ARATH1.546e-6382.39Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH1.600e-6080.74Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH2.167e-4969.34Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA30_ORYSJ4.087e-4870.71Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA21_ORYSJ7.708e-4765.94Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA16_ARATH8.819e-4360.14Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
AUX28_SOYBN1.152e-4261.54Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA17_ORYSJ5.717e-4263.64Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA14_ARATH2.172e-4164.12Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA3_ORYSJ2.837e-4162.24Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AF04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873194 ID=FC873194; Name=FC873194; organism=Citrus clementina; type=EST; length=725bp
GAATTCATTGGCAACCACTTCAAAGAACAATGATGAAGTAGATGGAAAAC
CAGGTCCTGGTGCTCTTTTTATTAAGGTTAGCATGGACGGGGCTCCTTAT
TTGAGGAAGGTAGATTTGAGAACATACACCAATTATGGGGAACTATCTTC
TGCTCTGGAGAAGATGTTCAGTTGCTTTACAATTGGTCAATGTGGATCAC
ATGAAGCACCAGGGAGGGAAATGCTGAGTGAGAGCAAGTTGAAGGATCTT
TTGCATGGATCAGAATATGTGCTTACATATGAGGACAAGGATGGTGACTG
GATGCTCGTTGGGGATGTGCCGTGGGAGATGTTTATTGATTCATGCAAGC
GATTAAAGATCATGAAAGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCA
ATGGAAAAATCCAAGATCAGGAACTAGTGAATGTCTGTCTGGGATGGGGT
GCCTTCTAGTTCATGCCTTTCATGGGTAGGAGGAGACTGGGTTGATGAAA
AGTTAAAAAGGACAGGATGGCATGGGCAAGATGCAAGTTTGTGGTTTAGT
TGTGTATCCTGTTTGTTTACATGAGGTTTGTGTTACTTTTTTAAGTTTGG
AAGAAGTCTATGTTTATGATATGATTGTTGTAAAACCATGTTGAGATACT
AAGAAAATTAGGATTCGTGGAGTTATATATCTATATAGTGACAGGGATCT
TATAAAAAAAAAAAAAAAAAAAAAA
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