FC873196

Overview
NameFC873196
Unique NameFC873196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length158
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1081 contig Ccv1_Contig1081:161..318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.053e-20
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KIFPRPTAGPLRPVVHG+TLKYNMK   G+GFTLEELKAAGIPKKLAPTIGI
Sbjct:   43 KIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGI 94          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KIFPRPT+GPLRPVVHG+TLKYNMK  AG+GFTLEELK AGIPKKLAPTIGI
Sbjct:   43 KIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGI 94          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KIFPRPTAGPLRPVVHG+TLKYNMK   G+GFTLEELK+AGIPKKLAPTIGI
Sbjct:   43 KIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGI 94          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KIFPRPT+GPLRPVVHG+TLKYNMK   G+GFTLEELKAAGIPKKLAPTIGI
Sbjct:   43 KIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGI 94          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.521e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KIFPRPTAGP+RPVVH +TL YNMK  AG+GFTLEELKAAGIPKKLAPTIGI
Sbjct:   43 KIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGI 94          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.859e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            KI PRPTAG LRP+VHG+TLKYNMK  +GRGF+LEELKAAGIPKKLAPTIGI
Sbjct:   39 KISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGI 90          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.629e-13
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            +I PRP AGPLRP+V   T++YN K  AGRGFTLEELKAAGI K++A TIGI
Sbjct:   45 RIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGI 96          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.739e-13
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:    9 FPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            FPRP AG L+P+V  +T+KYN K   GRGFTLEELK AGIP K APT+GI
Sbjct:   46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGI 95          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 8.084e-13
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            +I PRP +GPLRPVV   T++Y+ K  AGRGFTLEELKAAGI KK+A TIGI
Sbjct:   45 RIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGI 96          
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.938e-12
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3
Query:    3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158
            K+FPRP A  L+PVV G T++YNMK  AGRGFTLEELKAAG+  + A TIGI
Sbjct:   44 KVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGI 94          
The following BLAST results are available for this feature:
BLAST of FC873196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL132_BRANA1.053e-2090.3860S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL133_ARATH2.347e-2088.4660S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL131_BRANA2.347e-2088.4660S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL131_ARATH2.347e-2088.4660S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL132_ARATH1.521e-1986.54Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC9.859e-1984.6260S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_ICTPU3.629e-1369.2360S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_CHLSW4.739e-1368.0060S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE8.084e-1369.2360S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DICDI8.938e-1267.3160S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AF09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873196 ID=FC873196; Name=FC873196; organism=Citrus clementina; type=EST; length=158bp
TTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCCCGTCGTTCAT
GGCAAGACTTTGAAATATAACATGAAATGAACGGCTGGCAGAGGCTTTAC
TCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAACAA
TTGGCATT
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