FC873196
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.053e-20 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KIFPRPTAGPLRPVVHG+TLKYNMK G+GFTLEELKAAGIPKKLAPTIGI Sbjct: 43 KIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGI 94
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KIFPRPT+GPLRPVVHG+TLKYNMK AG+GFTLEELK AGIPKKLAPTIGI Sbjct: 43 KIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGI 94
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KIFPRPTAGPLRPVVHG+TLKYNMK G+GFTLEELK+AGIPKKLAPTIGI Sbjct: 43 KIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGI 94
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KIFPRPT+GPLRPVVHG+TLKYNMK G+GFTLEELKAAGIPKKLAPTIGI Sbjct: 43 KIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGI 94
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.521e-19 Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KIFPRPTAGP+RPVVH +TL YNMK AG+GFTLEELKAAGIPKKLAPTIGI Sbjct: 43 KIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGI 94
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.859e-19 Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 KI PRPTAG LRP+VHG+TLKYNMK +GRGF+LEELKAAGIPKKLAPTIGI Sbjct: 39 KISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGI 90
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 3.629e-13 Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 +I PRP AGPLRP+V T++YN K AGRGFTLEELKAAGI K++A TIGI Sbjct: 45 RIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGI 96
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.739e-13 Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3 Query: 9 FPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 FPRP AG L+P+V +T+KYN K GRGFTLEELK AGIP K APT+GI Sbjct: 46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGI 95
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 8.084e-13 Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 +I PRP +GPLRPVV T++Y+ K AGRGFTLEELKAAGI KK+A TIGI Sbjct: 45 RIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGI 96
BLAST of FC873196 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.938e-12 Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 3 Query: 3 KIFPRPTAGPLRPVVHGKTLKYNMK*TAGRGFTLEELKAAGIPKKLAPTIGI 158 K+FPRP A L+PVV G T++YNMK AGRGFTLEELKAAG+ + A TIGI Sbjct: 44 KVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGI 94 The following BLAST results are available for this feature:
BLAST of FC873196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873196 ID=FC873196; Name=FC873196; organism=Citrus clementina; type=EST; length=158bpback to top |