FC873243

Overview
NameFC873243
Unique NameFC873243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig63 contig Ccv1_Contig63:83..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873243 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.270e-26
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 EDIVNGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 255
            ++I+ G++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:   21 DEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of FC873243 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 EDIVNGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 234
            E+++ G   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:   26 EELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of FC873243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH9.270e-2662.35Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH1.175e-1239.74Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DF12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873243 ID=FC873243; Name=FC873243; organism=Citrus clementina; type=EST; length=536bp
GAGGATATTGTCAATGGGATGAAAAAGCTAGTTTCAGAGATTGATGCTGT
CAAATCTTTTGAATGGGGCCAAGATGTAGAAGGGCAGGAGATGCTTAGGC
AAGGCTTCACACATGCATTCTTGATGACATTCAACAAGAAGGAAGACTAT
ACAACCTTTGCAAGCCATCCCAGCCACGTCGAATTCTCGGCTACATTTTC
AGCTGCTATTGAGAAGATTGTCCTGCTTGATTTCCCTACCGTGCTTGGCA
AAGCACCAGCAGCATGACACTCCAAAATTCTAGGCGATAATAATTAAGTG
AGATTAGTATTAATCTGCTATATGCGTGTGTATGTTTGGTTTGCTTATCT
CTATGAGTTAATATTATTATTTGCCAGTATCAGTAACTATTTGGTTTGTC
ACAATATATAGCCTTATTATAAGTTCTTTAATTCTGCAATTTCAACCAGC
TGTATTATGGACACATATGTTGTATGCATGTAGCTTGATTGTGGAATTTG
GTAAATGCTAGAGCCTAGAAATCACTTTTCCTCCCT
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