FC873253

Overview
NameFC873253
Unique NameFC873253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length364
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8 contig Ccv1_Contig8:349..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873253 vs. ExPASy Swiss-Prot
Match: PIN4_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 2 
Query:    2 AEYSQCPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 175
            A+YS+    ++GGDLGW  RG M GPFQE AF  P+ V      T  P K+  GYHII+ EGRK
Sbjct:   69 AQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131
The following BLAST results are available for this feature:
BLAST of FC873253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PIN4_BOVIN4.377e-1151.56Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873253 ID=FC873253; Name=FC873253; organism=Citrus clementina; type=EST; length=364bp
TGCAGAATACTCCCAATGCCCGTCAGGAAAGAAGGGTGGAGATCTTGGAT
GGTTTCCACGTGGAAAGATGGCTGGCCCATTTCAGGAAGTTGCCTTCAAT
ACTCCTGTTGGAGTTACCAGTGCACCTTTCAAGTCTACGCATGGATACCA
CATAATCTTGTGTGAAGGGAGGAAGAATTGATCGGAAACAGTATGCCAAT
GAAGGGAATCTCTGAAGGGCGAGCATGGAGATGAAAATAATGTTATTGTA
TAATATGTGAATCTGGCGCATCCATGATGATTGACATCGGTGACTGATCG
ATGCTTATATGGTTCGAAGTTAAATGTTAAATGAGTACTTTTCTTAAAAA
AAAAAAAAAAAAAA
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