FC873258

Overview
NameFC873258
Unique NameFC873258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14427 contig Ccv1_Contig14427:3..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_ARATH (Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.918e-79
Identity = 151/228 (66.23%), Postives = 172/228 (75.44%), Query Frame = 2
Query:  137 MEGLVRSQISPIGAHYKQQHSVFIPKFSLKLRTNLCRARVGMMKHSKSFNSVAASVQPLEASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGKA 820
            ME L  S++ P+    ++  S+F     L+LR   CR  V +M H K    V ASVQP E S LG   N +PSKE+L LWR+ +AVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLS+V+++L+KRPPRLSPGI+E            YLISGGFR MINP+AS+LGIP ENIFAN LLF +SGEFLGFD NE TSRS GKA
Sbjct:    1 MEALTTSRVVPVQVPCRKLSSLFANFSCLELRRYPCRGLVSIMNHPKLLRPVTASVQPHELSTLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASILGIPRENIFANNLLFGNSGEFLGFDENEPTSRSGGKA 228          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_RAT (Phosphoserine phosphatase OS=Rattus norvegicus GN=Psph PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.391e-37
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 2
Query:  359 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGK 817
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +A+ L IP  N+FAN+L F  +GE+ GFD  + T+ S GK
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTERLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDETQPTAESGGK 158          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_BOVIN (Phosphoserine phosphatase OS=Bos taurus GN=PSPH PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.817e-37
Identity = 80/153 (52.29%), Postives = 103/153 (67.32%), Query Frame = 2
Query:  359 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGK 817
            E+  L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T +AMGG+VPF+ AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +AS L IP  N+FAN+L F  +GE+ GFD  + T+ S GK
Sbjct:    6 ELRNLFCSADAVCFDVDSTVIQEEGIDELAKFCGVEDAVSEMTRQAMGGAVPFKAALTQRLALIQPSREQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPSTNVFANRLKFYFNGEYAGFDETQPTAESGGK 158          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_MOUSE (Phosphoserine phosphatase OS=Mus musculus GN=Psph PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.373e-37
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 2
Query:  359 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGK 817
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+FCG   AV+E T RAMGG++PF++AL  RL+L +PS  QVQ  L + PP L+PGI E            +LISGGFR ++  +A+ L IP  N+FAN+L F  +GE+ GFD  + T+ S GK
Sbjct:    6 ELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVSEMTRRAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDEMQPTAESGGK 158          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_PONAB (Phosphoserine phosphatase OS=Pongo abelii GN=PSPH PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.099e-37
Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  359 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGK 817
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+ CG   AV+E T RAMGG+VPF+ AL  RL+L +PS  QVQ  + ++PP L+PGI E            +LISGGFR ++  +AS L IP  N+FAN+L F  +GE+ GFD  + T+ S GK
Sbjct:    6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGK 158          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_HUMAN (Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.099e-37
Identity = 79/153 (51.63%), Postives = 104/153 (67.97%), Query Frame = 2
Query:  359 EVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGK 817
            E+ +L+ +ADAVCFDVDSTV  +EGIDELA+ CG   AV+E T RAMGG+VPF+ AL  RL+L +PS  QVQ  + ++PP L+PGI E            +LISGGFR ++  +AS L IP  N+FAN+L F  +GE+ GFD  + T+ S GK
Sbjct:    6 ELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGK 158          
BLAST of FC873258 vs. ExPASy Swiss-Prot
Match: SERB_DROME (Phosphoserine phosphatase OS=Drosophila melanogaster GN=aay PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.880e-34
Identity = 77/168 (45.83%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  317 ASALGRSENTLPSKEVLQLWRTADAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLSQVQDFLEKRPPRLSPGIDEXXXXXXXXXXXXYLISGGFRHMINPIASVLGIPPENIFANQLLFKSSGEFLGFDANETTSRSEGKA 820
            ASA+   +    + +V+Q    +  VCFDVDSTV  +EGIDELAE+CG G  VA  T  AMGG++ F++AL  RL++ +P+  QV+DF+++RP  LS  +              YLISGGF  +I P+A+ LGIP +N++AN++LF   GE+  FD N+ TSRS GKA
Sbjct:   42 ASAITPPKQPQLAAKVIQ---QSQIVCFDVDSTVICEEGIDELAEYCGKGSEVARVTKEAMGGAMTFQDALKIRLNIIRPTQQQVRDFIQERPSTLSKNVKRFVSHLKAEGKQVYLISGGFDCLIAPVANELGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKA 206          
The following BLAST results are available for this feature:
BLAST of FC873258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SERB_ARATH1.918e-7966.23Phosphoserine phosphatase, chloroplastic OS=Arabid... [more]
SERB_RAT1.391e-3751.63Phosphoserine phosphatase OS=Rattus norvegicus GN=... [more]
SERB_BOVIN1.817e-3752.29Phosphoserine phosphatase OS=Bos taurus GN=PSPH PE... [more]
SERB_MOUSE2.373e-3751.63Phosphoserine phosphatase OS=Mus musculus GN=Psph ... [more]
SERB_PONAB3.099e-3751.63Phosphoserine phosphatase OS=Pongo abelii GN=PSPH ... [more]
SERB_HUMAN3.099e-3751.63Phosphoserine phosphatase OS=Homo sapiens GN=PSPH ... [more]
SERB_DROME1.880e-3445.83Phosphoserine phosphatase OS=Drosophila melanogast... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DH08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873258 ID=FC873258; Name=FC873258; organism=Citrus clementina; type=EST; length=823bp
TATTTTTTATGATTGGCAGTTGCGGGAAAAAGAAACAGAACTGAGTGGGC
AGACACTGAACATATCCCATCAGCACCCAACAACAGTGCGATCCAAAAGC
TTTAATTAACTTTCAAAAATTAACGTTATTAATTTGATGGAGGGGTTGGT
GAGATCTCAAATCTCTCCAATTGGTGCTCATTACAAACAACAACACTCTG
TTTTTATTCCGAAATTTTCATTGAAATTGAGGACAAATTTATGTAGAGCT
CGAGTTGGGATGATGAAGCATTCTAAATCATTCAATTCCGTTGCTGCTTC
AGTGCAACCATTAGAAGCCTCAGCATTGGGCCGTTCTGAGAACACACTGC
CCTCCAAAGAGGTTCTTCAGCTGTGGAGAACTGCTGATGCGGTGTGCTTC
GATGTTGATAGCACGGTATGTGTAGATGAGGGCATTGATGAACTTGCGGA
ATTTTGTGGAGCTGGAAAGGCTGTTGCGGAATGGACAGCCAGGGCAATGG
GGGGGTCTGTTCCGTTCGAGGAGGCCTTGGCTGCCAGACTTTCCTTGTTC
AAACCTTCATTGTCCCAAGTCCAGGATTTTCTTGAGAAGAGACCCCCTAG
GCTCTCACCTGGCATAGATGAGTTGGTCAAGAAGCTGAAGGCTAACAATA
AGAATGTTTATCTGATCTCTGGGGGCTTCCGTCATATGATCAATCCTATT
GCATCAGTCCTCGGGATTCCTCCTGAAAATATCTTTGCCAACCAACTGCT
GTTCAAGAGTTCTGGGGAGTTTCTGGGTTTTGATGCCAATGAAACTACTT
CAAGGAGTGAAGGAAAAGCCGCT
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