FC873269

Overview
NameFC873269
Unique NameFC873269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1092 contig Ccv1_Contig1092:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873269 vs. ExPASy Swiss-Prot
Match: PP349_ARATH (Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2)

HSP 1 Score: 298.13 bits (762), Expect = 3.695e-80
Identity = 151/251 (60.16%), Postives = 195/251 (77.69%), Query Frame = 3 
Query:    9 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIKSVGGEKTIDIAERTTQAIAALLRRLGLPNQGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 752
            E V+SF SGRPQIENKWTS+ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+DGFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+VYLLTI KGL+HRLAAGAK+P++N+++ +++ +I++  GEKTID+  R  Q I ALLRRL +P     S  ++RING++LK WFQPKL SPFS GKPG+L S Q  LG  I+ QQR+IR GNLSLE
Sbjct:  841 EPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLAAGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRINGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
The following BLAST results are available for this feature:
BLAST of FC873269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP349_ARATH3.695e-8060.16Pentatricopeptide repeat-containing protein At4g34... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BA09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873269 ID=FC873269; Name=FC873269; organism=Citrus clementina; type=EST; length=805bp
CCCTCAACGAGCATGTTTTGTCTTTCAACTCGGGAAGGCCACAAATTGAA
AATAAGTGGACGTCACTTGCCTTAATGGTCTACCGTGAAGCAATCGTTGC
TGGTACAATACCTACCGTGGAAGTTGTTTCAAAAGTTTTGGGATGCTTGC
AGCTTCCTTACAATGCTGACATAAGAGAGAGACTAGTAGAGAATTTGGGA
GTTAGTGCTGACGCATTGAAGCGCTCCAATCTCTGTTCATTGATTGATGG
TTTTGGGGAGTACGACCCTCGTGCTTTTTCATTACTTGAGGAAGCTGCTT
CTTTTGGAATTGTTCCATGTGTATCCTTCAAAGAAATTCCTGTTGTTGTT
GATGCAAGAAAGCTGGAGATTCATACTGCTAAGGTATACCTTTTAACTAT
ACTGAAAGGCCTCAGACATCGGCTTGCCGCTGGGGCGAAATTACCCAATG
TAAACATTTTACTGCCTGTGGAAAAGACTCAAATCAAGTCTGTTGGAGGG
GAGAAAACTATTGATATTGCAGAAAGGACCACCCAAGCAATTGCAGCACT
GTTGAGAAGGCTGGGACTTCCTAATCAAGGAAATGGATCATATGGAAAAA
TCAGAATCAATGGGCTTGCCTTAAAAAGATGGTTTCAACCGAAGCTTGCA
TCTCCTTTCAGTGGAAAACCAGGAGAGCTGAGCTCATTGCAATTGGGAAA
ATTTATCACCCATCAGCAGCGCAACATTCGGACTGGCAATCTCTCTTTGG
AGTAAAAAGGGAAATGTTTATGGCTGCCAGCANGGAAAACATTTGGAATA
TGTTC
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