FC873322

Overview
NameFC873322
Unique NameFC873322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873322_ssr212 microsatellite FC873322_ssr212:212..223. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873322 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.030e-20
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 AFRKLFPEYVEKYNEQQLAEQRVSEQLSPESRNEENSRPKVEKVGSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 270
            AFRKLFPEYVEKYN+QQLAEQ  ++  +PES  + +++ + EK        +    KE +KN KQ  P W++LLLVS+FG+VMALPLLQL
Sbjct:  148 AFRKLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQGLPAWIILLLVSVFGVVMALPLLQL 237
[Close]
BLAST of FC873322 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.910e-17
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 FRKLFPEYVEKYNEQQLAEQRVSEQLSPESRNEE-----NSRPKVEK-VGSGEDMKTIDTPKEARKNRKQSFPTWMLLLLVSIFGIVMALPLLQL 270
            FRKLFPEYVEKY++QQ+AE+  + Q +  S N++     N++ + EK VG  ++       KE R+N+K++ P W++LLLVSI G+VMALPLLQL
Sbjct:  149 FRKLFPEYVEKYSQQQVAEEEAATQQTTTSENQDFPQKDNAKVESEKSVGLKKESIQEVGLKERRRNKKEALPGWIVLLLVSIVGVVMALPLLQL 243
The following BLAST results are available for this feature:
BLAST of FC873322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBC34_ARATH1.030e-2054.44Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC33_ARATH6.910e-1749.47Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BE07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873322 ID=FC873322; Name=FC873322; organism=Citrus clementina; type=EST; length=398bp
GCATTCAGGAAATTGTTTCCGGAGTACGTGGAGAAATACAATGAGCAGCA
GCTTGCTGAGCAACGTGTTTCAGAGCAGCTGTCACCAGAATCACGTAATG
AAGAAAATTCTAGACCAAAGGTCGAGAAAGTTGGTTCAGGTGAAGACATG
AAAACTATAGATACTCCCAAGGAAGCAAGAAAAAACAGGAAACAGTCATT
CCCAACATGGATGCTGCTGCTGCTTGTTTCTATCTTTGGCATTGTAATGG
CATTGCCTCTGCTTCAGCTTTGATATATAATCTAGACCACAAATTGGAAT
GTCTATAGTGGGTAGCGGACATACAGGCTTTTGCTAATCTTAATTCGAAA
AGAGAATCCTAATGTGCTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAA
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