FC873344

Overview
NameFC873344
Unique NameFC873344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873344_ssr316 microsatellite FC873344_ssr316:316..327. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1204 contig Ccv1_Contig1204:3..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873344 vs. ExPASy Swiss-Prot
Match: BLH1_ARATH (BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 76/222 (34.23%), Postives = 89/222 (40.09%), Query Frame = 1 
Query:  226 MATYFHGNPAEFQAPD--GLQTLVLMNPTTYVXXXXXXXXXFSDTNHXXXXXXXHN--------SLIFLNXXXXXXXXXXXXXXTQHFVGIPTTAHQD------DSISPLHGLLPRV----HXXXXXXXXXXXXARDTPRAKQGXXXXXXXHQ-------------HPAFGSQGGQTVSGEDIRXXXXXXXXXXXXXXXXXXMQSVLLSSKYLKAAQELLDE 792
            MA YFHGNP E  A    GLQTL+LMNPTTYV          ++ N         N        S +FL+              +Q FVGIP + H+       D+IS LHG  PRV    +            A +TPRA+QG        Q             H  FGS       GEDIR                      L+SSKYLKAAQELLDE
Sbjct:    1 MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLDSHAPQPNA------SQQFVGIPLSGHEAASITAADNISVLHGYPPRVQYSLYGSHQVDPTHQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHVGFGSG-----HGEDIRVGSGSTGSGVTNGIAN------LVSSKYLKAAQELLDE 205
The following BLAST results are available for this feature:
BLAST of FC873344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BLH1_ARATH1.187e-1434.23BEL1-like homeodomain protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AC01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873344 ID=FC873344; Name=FC873344; organism=Citrus clementina; type=EST; length=792bp
TTCACTCCCTTTCCTTTTCCTCTTCACCATCATCTTCTAGCCACATAGAA
GATGAATAAATATGAATAAATTATCCATCATCTGTCAATTTCCTTTCAGG
TTTTGCTTGATAAGATCGATCCATCGATGGGCTGATTGCTCAAATTAAGA
CTCAAATCAGGCAATTATAAGTTCGTTTCGGTTTCGTTTTTCAAGAACTC
AAGATCAAAATAATAAGGTAACAGGATGGCAACGTACTTTCATGGGAACC
CAGCTGAGTTTCAAGCCCCAGATGGGCTTCAAACCCTCGTACTTATGAAC
CCTACAACTTACGTTCAACAACAACAACAGCAACACCAACAATTCTCCGA
CACAAATCATCCTCCGGCGCCGGCGCCGGCTCACAACAGCCTCATTTTCC
TCAACTCCTCTGCCATCTCCCCTCACGCGCCGCCGCCACCTTCCCACACT
CAACACTTCGTCGGCATCCCCACCACCGCTCATCAGGATGACTCCATCTC
CCCTCTGCATGGACTCCTGCCGCGCGTCCACTACAACCTGTACAACCCCA
ATTACCCTAGTCCACCAGCGCGTGACACCCCACGCGCCAAGCAGGGACTG
TCTTTGAGCCTCTCTTCCCACCAACACCCCGCCTTCGGCTCCCAGGGTGG
TCAAACGGTTTCCGGAGAGGATATTAGGGTTTCTGGCGGGTCTGCATCGT
CGGGTTCGGGTGTCACTAATGGGGTTTCCGGGATGCAAAGTGTGTTGTTG
AGCTCTAAGTACTTGAAAGCTGCTCAGGAGCTGCTTGATGAA
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