FC873375

Overview
NameFC873375
Unique NameFC873375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.928e-81
Identity = 136/211 (64.45%), Postives = 180/211 (85.31%), Query Frame = 1
Query:    4 NVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS----SKKDSC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            NVVIWGSLM+ACR+HGE+EL +F AK++L+L+PDHDGALVL+SNIYA+++RW+DV  +R+ M+E+ + KE+  SRI+ N + +EFL  D+ HKQ+++IY KL+EV+S+LK AGYVPD  S LVD+E+EEK++++LWHSEKLALC+GL++     +KDSC  IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+G+CSC+DYW
Sbjct:  512 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.492e-65
Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            PNVVIW +L+ AC VHG+ +LAEF   Q+LQL+P+H G  VLLSN+YA ++RW DV ++RK M   G+ K    S +E+ N V+EFL  D+SH Q+D IY KL E+   L+  GYVP I +  VD+E+EEK   +++HSEK+A+ + LIS+ + S I +VKNLRVC DCH  IKLVSKVY REIV+RDR+RFHH+K+G CSC+DYW
Sbjct:  390 PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.059e-61
Identity = 105/207 (50.72%), Postives = 153/207 (73.91%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  +WG+L+ AC++H  + LAE    +LL+L+P +DGA VLLSNIYAK  +W++V ELRK M+  G+ KE  CS IE++  ++EFL+ D +H  ++++Y KL+EV+ +LK  GY P+I   L  +E+EE +E  L  HSEKLA+CYGLIS++    IR++KNLRVC DCH+  KL+S++Y REI++RDR RFHH+++G CSC D+W
Sbjct:  532 PSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58
Identity = 105/207 (50.72%), Postives = 143/207 (69.08%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            PN VIWG+L+ ACR+H  IEL E   + L+ +DP H G  V  +NI+A DK+W    E R+ MKE+G+ K   CS I +    +EFL  DRSH + ++I  K   +  +L+  GYVP++   L+DL D+++RE I+  HSEKLA+ YGLI +K  + IRI+KNLRVC+DCH   KL+SK+Y R+IV+RDRTRFHH++DG CSC DYW
Sbjct:  414 PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.680e-57
Identity = 99/206 (48.06%), Postives = 148/206 (71.84%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+VV WGSL++ACRVH  I+L +  A++LL L+P++ GA   L+N+Y+   +W++  ++RKSMK+  + KE+  S IE+ ++V+ F   D +H + ++IY  + ++  E+K  GYVPD  S L DLE+E K +++  HSEKLA+ +GLIS+   + +RI+KNLRVC DCH  IK +SK+  REI++RD TRFHH+KDG CSC+DYW
Sbjct:  581 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.330e-56
Identity = 100/206 (48.54%), Postives = 145/206 (70.39%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+ VIW SL+ AC++HG +EL E  A+ L++++P++ G+ VLLSNIYA   RW +V + R  + ++G+ K   CS IE+++ V+EF+  D+ H +  +IY  L E+   L+ AG+VPD    L ++E+E K   +  HSEKLA+ +GLIS+K  + + IVKNLRVC +CH   KL+SK+Y REI+ RDRTRFHH++DGVCSC DYW
Sbjct:  536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.268e-56
Identity = 102/211 (48.34%), Postives = 149/211 (70.62%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK-ERA----CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+  ++G+L+ ACRVH  +ELAEF A++LLQL+  +    V L+NIYA   RW+DV  +RK MKE  ++K ER      S IE+ N+V+ F ++DR H + D I++KL E+  ++K AGY P++  AL ++E+E+K +++LWHSEKLA+ +G I   + S I++ KNLR+C DCH  IK +S++  REI++RD TRFHH+KDG CSC DYW
Sbjct:  451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 661          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56
Identity = 101/206 (49.03%), Postives = 141/206 (68.45%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            PN VIW SL+AACRV G +E+A + A+++  L P+  G+ VLLSN+YA   RW D+ ++R SMKE+G+ K    S I++  + +EF + D SH +   I   L+EV       G+VPD+ + L+D++++EK  ++  HSEKLA+ YGLISS K + IRIVKNLRVC DCH+F K  SKVY REI++RD  RFH+ + G CSC D+W
Sbjct:  637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.620e-56
Identity = 98/209 (46.89%), Postives = 143/209 (68.42%), Query Frame = 1
Query:    4 NVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE----EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            +V++W + + ACRVH   EL +  A+++L+LDP+   A + LSNIYA   +W++  E+R+ MKER ++KE  CS IE+ +++++F   D +H    QIY++L+ +I+E+K  GYVPD    L  LE+E    EK  ++  HSEK+A+ +GLIS+ K   +R+ KNLRVC DCHN +K +S V  REIV+RD  RFHH+KDG CSC DYW
Sbjct:  642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850          
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55
Identity = 101/206 (49.03%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618
            P+ +IW SL+AACR+H  +ELAE +  +L +LD  + G  +LLS+IYA   RW+DV  +R  MK RG++K    S +E+N EV+ FL  D  H Q ++IYE L E+  +L  AGYV +  S   D+++EEK   +  HSEKLA+ +G++++   S + +VKNLRVC DCHN IKL+SK+  RE V+RD  RFHH+KDG CSC DYW
Sbjct:  454 PDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659          
The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PP311_ARATH5.928e-8164.45Pentatricopeptide repeat-containing protein At4g14... [more]
PP330_ARATH3.492e-6555.83Pentatricopeptide repeat-containing protein At4g21... [more]
PP175_ARATH3.059e-6150.72Pentatricopeptide repeat-containing protein At2g29... [more]
PP449_ARATH1.088e-5850.72Pentatricopeptide repeat-containing protein At5g66... [more]
PP168_ARATH2.680e-5748.06Pentatricopeptide repeat-containing protein At2g22... [more]
PPR21_ARATH1.330e-5648.54Pentatricopeptide repeat-containing protein At1g08... [more]
PP316_ARATH2.268e-5648.34Pentatricopeptide repeat-containing protein At4g16... [more]
PP249_ARATH5.053e-5649.03Pentatricopeptide repeat-containing protein At3g22... [more]
PP272_ARATH8.620e-5646.89Pentatricopeptide repeat-containing protein At3g49... [more]
PP258_ARATH1.920e-5549.03Pentatricopeptide repeat-containing protein At3g26... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bp
CCAAATGTTGTCATTTGGGGATCACTGATGGCAGCTTGCCGGGTTCATGG
TGAGATTGAATTAGCTGAGTTTACTGCCAAACAGCTTCTCCAGCTAGATC
CAGATCACGATGGTGCTCTTGTGCTATTATCAAACATTTATGCAAAAGAC
AAAAGGTGGCAAGATGTTGGGGAGTTAAGGAAATCAATGAAGGAAAGAGG
TATACTTAAAGAGAGAGCATGCAGTAGAATAGAAATGAACAATGAAGTGT
ACGAGTTTCTGACAGCAGATAGAAGTCATAAACAAACAGATCAGATCTAT
GAGAAGCTAAATGAGGTGATTAGTGAGTTGAAGCCGGCTGGCTATGTTCC
TGATATCCATAGTGCTCTGGTTGATTTAGAGGATGAAGAAAAGAGGGAAG
TGATTCTATGGCACAGTGAGAAGTTGGCACTTTGTTATGGGCTGATCAGT
TCCAAAAAAGATTCATGCATTCGCATAGTAAAGAATCTCAGGGTTTGTGA
GGACTGCCATAACTTTATAAAACTGGTTTCCAAGGTTTATGCGAGGGAGA
TTGTCATCCGAGATAGAACCAGGTTTCACCATTACAAAGATGGTGTGTGT
TCTTGCAAAGATTATTGGTGACCTTTTTTAAACAAATTGGAACTCATGTC
ATAACTGTGAAACATGTAAACATTCACTAAGCAAAAAAAAAAAAAAAAAA
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