FC873375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 5.928e-81 Identity = 136/211 (64.45%), Postives = 180/211 (85.31%), Query Frame = 1 Query: 4 NVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLIS----SKKDSC--IRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 NVVIWGSLM+ACR+HGE+EL +F AK++L+L+PDHDGALVL+SNIYA+++RW+DV +R+ M+E+ + KE+ SRI+ N + +EFL D+ HKQ+++IY KL+EV+S+LK AGYVPD S LVD+E+EEK++++LWHSEKLALC+GL++ +KDSC IRIVKNLRVCEDCH F KLVSKVY REI++RDRTRFH YK+G+CSC+DYW Sbjct: 512 NVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 3.492e-65 Identity = 115/206 (55.83%), Postives = 152/206 (73.79%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 PNVVIW +L+ AC VHG+ +LAEF Q+LQL+P+H G VLLSN+YA ++RW DV ++RK M G+ K S +E+ N V+EFL D+SH Q+D IY KL E+ L+ GYVP I + VD+E+EEK +++HSEK+A+ + LIS+ + S I +VKNLRVC DCH IKLVSKVY REIV+RDR+RFHH+K+G CSC+DYW Sbjct: 390 PNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 3.059e-61 Identity = 105/207 (50.72%), Postives = 153/207 (73.91%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ +WG+L+ AC++H + LAE +LL+L+P +DGA VLLSNIYAK +W++V ELRK M+ G+ KE CS IE++ ++EFL+ D +H ++++Y KL+EV+ +LK GY P+I L +E+EE +E L HSEKLA+CYGLIS++ IR++KNLRVC DCH+ KL+S++Y REI++RDR RFHH+++G CSC D+W Sbjct: 532 PSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.088e-58 Identity = 105/207 (50.72%), Postives = 143/207 (69.08%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVIL-WHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 PN VIWG+L+ ACR+H IEL E + L+ +DP H G V +NI+A DK+W E R+ MKE+G+ K CS I + +EFL DRSH + ++I K + +L+ GYVP++ L+DL D+++RE I+ HSEKLA+ YGLI +K + IRI+KNLRVC+DCH KL+SK+Y R+IV+RDRTRFHH++DG CSC DYW Sbjct: 414 PNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.680e-57 Identity = 99/206 (48.06%), Postives = 148/206 (71.84%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+VV WGSL++ACRVH I+L + A++LL L+P++ GA L+N+Y+ +W++ ++RKSMK+ + KE+ S IE+ ++V+ F D +H + ++IY + ++ E+K GYVPD S L DLE+E K +++ HSEKLA+ +GLIS+ + +RI+KNLRVC DCH IK +SK+ REI++RD TRFHH+KDG CSC+DYW Sbjct: 581 PDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.330e-56 Identity = 100/206 (48.54%), Postives = 145/206 (70.39%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ VIW SL+ AC++HG +EL E A+ L++++P++ G+ VLLSNIYA RW +V + R + ++G+ K CS IE+++ V+EF+ D+ H + +IY L E+ L+ AG+VPD L ++E+E K + HSEKLA+ +GLIS+K + + IVKNLRVC +CH KL+SK+Y REI+ RDRTRFHH++DGVCSC DYW Sbjct: 536 PDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 218.779 bits (556), Expect = 2.268e-56 Identity = 102/211 (48.34%), Postives = 149/211 (70.62%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILK-ERA----CSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ ++G+L+ ACRVH +ELAEF A++LLQL+ + V L+NIYA RW+DV +RK MKE ++K ER S IE+ N+V+ F ++DR H + D I++KL E+ ++K AGY P++ AL ++E+E+K +++LWHSEKLA+ +G I + S I++ KNLR+C DCH IK +S++ REI++RD TRFHH+KDG CSC DYW Sbjct: 451 PHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 661
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 5.053e-56 Identity = 101/206 (49.03%), Postives = 141/206 (68.45%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 PN VIW SL+AACRV G +E+A + A+++ L P+ G+ VLLSN+YA RW D+ ++R SMKE+G+ K S I++ + +EF + D SH + I L+EV G+VPD+ + L+D++++EK ++ HSEKLA+ YGLISS K + IRIVKNLRVC DCH+F K SKVY REI++RD RFH+ + G CSC D+W Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 8.620e-56 Identity = 98/209 (46.89%), Postives = 143/209 (68.42%), Query Frame = 1 Query: 4 NVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDE----EKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 +V++W + + ACRVH EL + A+++L+LDP+ A + LSNIYA +W++ E+R+ MKER ++KE CS IE+ +++++F D +H QIY++L+ +I+E+K GYVPD L LE+E EK ++ HSEK+A+ +GLIS+ K +R+ KNLRVC DCHN +K +S V REIV+RD RFHH+KDG CSC DYW Sbjct: 642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
BLAST of FC873375 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.920e-55 Identity = 101/206 (49.03%), Postives = 140/206 (67.96%), Query Frame = 1 Query: 1 PNVVIWGSLMAACRVHGEIELAEFTAKQLLQLDPDHDGALVLLSNIYAKDKRWQDVGELRKSMKERGILKERACSRIEMNNEVYEFLTADRSHKQTDQIYEKLNEVISELKPAGYVPDIHSALVDLEDEEKREVILWHSEKLALCYGLISSKKDSCIRIVKNLRVCEDCHNFIKLVSKVYAREIVIRDRTRFHHYKDGVCSCKDYW 618 P+ +IW SL+AACR+H +ELAE + +L +LD + G +LLS+IYA RW+DV +R MK RG++K S +E+N EV+ FL D H Q ++IYE L E+ +L AGYV + S D+++EEK + HSEKLA+ +G++++ S + +VKNLRVC DCHN IKL+SK+ RE V+RD RFHH+KDG CSC DYW Sbjct: 454 PDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659 The following BLAST results are available for this feature:
BLAST of FC873375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 146
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873375 ID=FC873375; Name=FC873375; organism=Citrus clementina; type=EST; length=700bpback to top |