FC873423

Overview
NameFC873423
Unique NameFC873423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1109 contig Ccv1_Contig1109:2..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RRMJ1_HUMAN (Putative ribosomal RNA methyltransferase 1 OS=Homo sapiens GN=FTSJ1 PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.338e-74
Identity = 135/207 (65.22%), Postives = 166/207 (80.19%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823
            MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+ V R VDLCAAPGSWSQVLS+K+           +G    +VA+DLQ MAP+ GV+Q+QGDIT   TA+ +I+HF GC ADLVVCDGAPDVTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL++FF  V  AKP+SSRNSSIEAFAVC+
Sbjct:    1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQ 197          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RRMJ1_DICDI (rRNA methyltransferase 1 homolog OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.548e-73
Identity = 135/206 (65.53%), Postives = 165/206 (80.10%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFE VKRVVDLCAAPGSWSQVLSR++Y   K  PD +      IVA+DLQ MAP++GV+Q++GDIT   T++ +I HFDG  ADL++ DGAPDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+KLFF  V+F KP SSR SS+E F +C
Sbjct:    1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLSRRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLADLIISDGAPDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHVSFVKPSSSRESSLENFILC 199          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RRMJ1_CAEEL (Putative ribosomal RNA methyltransferase R74.7 OS=Caenorhabditis elegans GN=R74.7 PE=2 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.491e-71
Identity = 133/206 (64.56%), Postives = 160/206 (77.67%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            MGK SRDKRDIYYR AKE  WRARSAFKL+QID+EF I + V+R VDLCAAPGSWSQVLS++LY          E     IVAIDLQPMAPI GVIQ+QGDIT+  TA  VI+HF G K+D+V+CDGAPDVTG+H +DEF+Q++LILA   + +HVLKEGG F+AKIFR +++SLLY Q+K +F  V  AKP+SSR SS EAF +C
Sbjct:    1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAPDVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYLAKPRSSRQSSCEAFVLC 197          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: YEK3_SCHPO (Putative ribosomal RNA methyltransferase C4F10.03c OS=Schizosaccharomyces pombe GN=SPAC4F10.03c PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.153e-70
Identity = 131/209 (62.68%), Postives = 165/209 (78.95%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLY--LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 823
            MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FE  KRVVDLCAAPGSWSQVLSR+L   +   ++ D +    P+IVA+DLQPMAPI+GV  +Q DIT+  T  +++ HF    ADLVV DGAPDVTGLHD+DE++Q+Q++LA   +   VLK GGKF+AKIFRG+D SLLY QL+L F  V+ AKP+SSR SSIE+F VCE
Sbjct:    1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLSRELLKNIDTSIAADEK----PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADLVVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRLMFRKVSCAKPRSSRASSIESFVVCE 205          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RMJ1A_DROME (Putative ribosomal RNA methyltransferase CG5220 OS=Drosophila melanogaster GN=CG5220 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.217e-66
Identity = 128/207 (61.84%), Postives = 155/207 (74.88%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I   V+R VDLCAAPGSWSQVLSRKLY   +      E     I+A+DLQ MAPI G++Q+QGDIT   TAE +I HF G  KA LVVCDGAPDVTG+H+MDE++Q QL++A L++ T VL+ GG F+AKIF+G  TSLL  Q+++FF      KP SSR SSIEAF VC
Sbjct:    1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLSRKLYDTCETDD---EKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEAFVVC 204          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: RMJ1B_DROME (Putative ribosomal RNA methyltransferase CG7009 OS=Drosophila melanogaster GN=CG7009 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.652e-62
Identity = 122/205 (59.51%), Postives = 152/205 (74.15%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAV 817
            MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + E + R VDLCAAPGSWSQVL+++LY P  L P+ RE     I+A+DLQ MAPIEGV Q++ DI+   TAE +I  F G KA +VV DGAPD TG+HD D +VQ +L+L+ L++ T +L+EGG F++KI+R   TS LY QLK FF  V   KP +SRNSSIEAF V
Sbjct:    1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLAKRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFFKNVCVFKPSASRNSSIEAFVV 201          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: TRM7_YEAST (tRNA (uridine-2'-O-)-methyltransferase TRM7 OS=Saccharomyces cerevisiae GN=TRM7 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 9.066e-61
Identity = 120/208 (57.69%), Postives = 157/208 (75.48%), Query Frame = 2
Query:  203 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEA--VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+  +   +KRVVDLCAAPGSWSQVLSRKL+     SP S + D   IV++DLQPM+PI  V  +Q DIT+ +T   +++ F   KAD V  DGAPDVTGLHD+DE+VQ QLI++ L +   +LK+GG F+AKIFRG+D  +LY QL   F  +  AKP+SSR +S+EAF VC
Sbjct:    1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQVLSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADFVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGYLFDKIVCAKPRSSRGTSLEAFIVC 204          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: SPB1_EMENI (AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans GN=spb1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.531e-36
Identity = 88/207 (42.51%), Postives = 118/207 (57.00%), Query Frame = 2
Query:  200 IMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            I  K  + + D +YR AKE+G+RAR+AFKL+Q+++++   E  K ++DLCAAPGSW QV +    +PA+           LIV +DL P+ PI  VI  Q DIT  +    +  H    KAD V+ DGAP+V      D F Q++L+L  L + T  L EGG F+ K+FR KD + L    K  F  V   KP SSRN S E F VC
Sbjct:    3 IQKKHGKGRLDKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ----------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPPSSRNVSAEIFVVC 197          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: SPB1_ASPFU (AdoMet-dependent rRNA methyltransferase spb1 OS=Aspergillus fumigatus GN=spb1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.009e-35
Identity = 84/207 (40.58%), Postives = 118/207 (57.00%), Query Frame = 2
Query:  200 IMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            I  K  + + D +YR AKE+G+RAR+AFKL+Q+++++   E  K ++DLCAAPGSW QV +    +P +           +I+ +DL P+ PI  VI  Q DIT  +    + +H    KAD V+ DGAP+V      D F Q++L+L  + + T  L EGG F+ K+FR KD + L    K  F  V   KP SSRN S E F VC
Sbjct:    3 IQKKHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPTQ----------SIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAPNVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRNVSAEIFVVC 197          
BLAST of FC873423 vs. ExPASy Swiss-Prot
Match: SPB1_MAGGR (AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe grisea GN=SPB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.009e-35
Identity = 85/207 (41.06%), Postives = 117/207 (56.52%), Query Frame = 2
Query:  200 IMGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEAVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC 820
            I  K  + + D +Y+ AKE+G+RAR+AFKL+Q+++++   E  K ++DLCAAPGSW QV        A++ P S      LIV +DL P+ PI  VI  Q DIT  +    + +H    KAD V+ DGAP+V      D F Q++L L  + + T  L EGG F+ K+FR KD + +       F  V   KP SSRN S E F VC
Sbjct:    3 IQKKHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVA-------AEVMPVSS-----LIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAPNVGTAWVQDSFNQAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPPSSRNVSAEIFVVC 197          
The following BLAST results are available for this feature:
BLAST of FC873423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
RRMJ1_HUMAN9.338e-7465.22Putative ribosomal RNA methyltransferase 1 OS=Homo... [more]
RRMJ1_DICDI3.548e-7365.53rRNA methyltransferase 1 homolog OS=Dictyostelium ... [more]
RRMJ1_CAEEL1.491e-7164.56Putative ribosomal RNA methyltransferase R74.7 OS=... [more]
YEK3_SCHPO2.153e-7062.68Putative ribosomal RNA methyltransferase C4F10.03c... [more]
RMJ1A_DROME3.217e-6661.84Putative ribosomal RNA methyltransferase CG5220 OS... [more]
RMJ1B_DROME1.652e-6259.51Putative ribosomal RNA methyltransferase CG7009 OS... [more]
TRM7_YEAST9.066e-6157.69tRNA (uridine-2'-O-)-methyltransferase TRM7 OS=Sac... [more]
SPB1_EMENI4.531e-3642.51AdoMet-dependent rRNA methyltransferase spb1 OS=Em... [more]
SPB1_ASPFU1.009e-3540.58AdoMet-dependent rRNA methyltransferase spb1 OS=As... [more]
SPB1_MAGGR5.009e-3541.06AdoMet-dependent rRNA methyltransferase SPB1 OS=Ma... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1CA05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873423 ID=FC873423; Name=FC873423; organism=Citrus clementina; type=EST; length=831bp
AGAGGCCAAGGATCTGTTTGATACAAATTGTCATAACGTCATAAGTGCAG
GGACCGGCCCAGTACCGGAAAAACGAAAGTGAACAAAACGATAAACCCTT
TCTCTAACCGGAGGGTTTTCAGTCCATTCTCCAAAATAAAGGAAGCAGTG
CAGTGATATCCATCAAAAGGCAAGAGTTTGGTTTATACCAGGAGCTTATA
TCATGGGCAAAGCTTCGAGGGATAAGAGGGATATTTATTATCGTAAAGCA
AAGGAAGAAGGTTGGCGTGCTCGTAGTGCCTTTAAGCTTCTTCAGATAGA
CGAGGAATTCAACATATTTGAAGCTGTGAAGCGTGTGGTAGATTTATGTG
CTGCCCCTGGTAGTTGGAGTCAGGTTTTGAGTCGCAAATTGTATCTCCCG
GCAAAGTTGTCACCTGATTCCAGGGAGGGTGATCTTCCGCTCATTGTGGC
TATTGATTTGCAGCCCATGGCTCCAATTGAAGGTGTTATTCAAGTGCAGG
GTGATATAACTAATGCCCGAACAGCTGAAGTGGTTATAAGACATTTTGAT
GGCTGCAAAGCTGACTTGGTTGTATGTGATGGTGCACCTGATGTAACTGG
CCTTCATGATATGGATGAATTTGTTCAATCCCAACTTATACTTGCTGGTT
TAACTGTTGTTACTCACGTACTTAAAGAAGGTGGGAAGTTTATTGCAAAG
ATATTCCGTGGAAAAGATACTAGTCTTCTATACTGTCAGCTGAAATTATT
TTTCCCTGTAGTGACTTTTGCAAAACCAAAAAGCAGCCGTAATTCAAGCA
TAGAGGCATTCGCTGTTTGTGAGATTATTCC
back to top