FC873434

Overview
NameFC873434
Unique NameFC873434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1111 contig Ccv1_Contig1111:133..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873434 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.356e-39
Identity = 75/131 (57.25%), Postives = 102/131 (77.86%), Query Frame = 3 
Query:    9 TTYPAL*VKTLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLTKSVQELNHLGQAKGQDFLWHMRNVETWVSAALTDENTCTDGFRGKALEGKVKSSV 401
            TTYPA+  ++LSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+++S  E+ +L  AKG DF + M NVETWVSAALTDE TC DGF GK ++GK+K SV
Sbjct:   36 TTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESV 166
The following BLAST results are available for this feature:
BLAST of FC873434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA8.356e-3957.2521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CB06FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873434 ID=FC873434; Name=FC873434; organism=Citrus clementina; type=EST; length=402bp
GCAAATCCACAACTTATCCAGCGCTGTGAGTGAAGACTCTCTCAGCTTAC
GCCCCATCAATTCAACAAAGCCCCCGGCAACTGGCTGTCACAGCCTTGTC
CGTGAGCCTCTCCAGGGCCCAATCCGCAAAGTCATTCGTGACCAAGCTGA
GGAAGTTCAGGAACCTGAAGCACAGAGAGTATGAGGCGATTGCCGACTGC
TTGGATGAGATGGGTGACACTGTGGACCGGCTCACCAAGTCGGTTCAGGA
GCTGAACCACCTGGGTCAGGCCAAGGGTCAGGACTTTCTGTGGCACATGA
GAAACGTCGAGACATGGGTTAGTGCTGCTTTGACTGATGAGAACACTTGT
ACTGATGGGTTCCGTGGCAAGGCCTTGGAGGGTAAGGTTAAGTCCTCTGT
TA
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