FC873442

Overview
NameFC873442
Unique NameFC873442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14446 contig Ccv1_Contig14446:44..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_ARATH (Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.323e-58
Identity = 110/138 (79.71%), Postives = 127/138 (92.03%), Query Frame = 1
Query:    1 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPA 414
            EKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG KMLVPLTASLYVPGTLD+A KVLVDIGTGYF+EKTMD+GKDYC+RKINLLKSNFDQL EVA KKK+++DEA ++LQAK+KQL  A
Sbjct:   11 EKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKTMDDGKDYCQRKINLLKSNFDQLFEVAAKKKSVADEAGMVLQAKVKQLTAA 148          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_PONAB (Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 405
            ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  +      ++  K++QL
Sbjct:    9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIRQL 142          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_MOUSE (Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 405
            ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  +      ++  K++QL
Sbjct:    9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQL 142          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_HUMAN (Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 405
            ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  +      ++  K++QL
Sbjct:    9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQL 142          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_BOVIN (Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 46/134 (34.33%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQL 405
            ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L    +G ++LVPLT+S+YVPG L D   VL+D+GTGY+VEKT ++ KD+ +RKI+ L    +++     +K  +      ++  K++QL
Sbjct:    9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQQL 142          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_DICDI (Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 43/130 (33.08%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    7 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKL 396
            +S+EQL+ ++EQ + E+  L +S+  ++ A+++   A  A+  L     G  MLVPLT+S+Y+PG ++   KVLVDIGTGY+VE  +++G+++  RK+ L+    +++      K+   +    + Q+K+
Sbjct:   14 LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMGIEQGQNFSNRKVQLITEQVNKVQTAINMKRQNLESIVQVAQSKI 142          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_DROME (Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.702e-17
Identity = 43/137 (31.39%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAKLKQLAPA 414
            K+S EQL  IK++ + E+  +QDSL+ +    ++   +  AL       +  ++LVPLT+S+YVPG + D ++ ++DIGTGY++EK ++  KDY +R++  ++   +++ ++  +K    +    +L+  +KQ A A
Sbjct:   18 KLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYYIEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVMSVLE--MKQAAAA 152          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_YEAST (Prefoldin subunit 5 OS=Saccharomyces cerevisiae GN=GIM5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 46/135 (34.07%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP-QGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTIS-DEAAVILQAKLKQ 402
            K++ EQL A+K+Q D E+     SL  +  A  +       +  +S    +G K+LVP +ASLY+PG + D  K +VDIGTGY+VEK+ +    + ++K++ L     Q+ ++  +K   S    A I QA ++Q
Sbjct:   10 KLNPEQLNAVKQQFDQELQHFTQSLQALTMAKGKFTECIDDIKTVSQAGNEGQKLLVPASASLYIPGKIVDNKKFMVDIGTGYYVEKSAEAAIAFYQKKVDKLNKESVQIQDIIKEKTQYSLSIEAQIRQAAIRQ 144          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_SCHPO (Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe GN=bob1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    7 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD-LSLRPQGAKMLVPLTASLYVPGTLDDAH-KVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKTISDEAAVILQAK 393
            +S+EQL  + +Q D E+  L  S   +  A  +       ++D +     G ++LVPLT+SLYVPG L+  + K+LVDIGTGY+VEK+  E  +Y +RK   L S+ + L      K         I+Q K
Sbjct:   13 LSLEQLSEVIKQLDSELEYLSTSYGQLGRAQLKFRECLANVNDAVRAENDGKEVLVPLTSSLYVPGKLNLGNSKLLVDIGTGYYVEKSAGEATEYYKRKCEYLASSIENLNNAIDAKSVQIRAVQNIMQQK 143          
BLAST of FC873442 vs. ExPASy Swiss-Prot
Match: PFD5_CAEEL (Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=R151.9 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 42/135 (31.11%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDAHKVLVDIGTGYFVEKTMDEGKDYCERKINLLKSNFDQLIEVATKKKT----ISDEAAVILQAKL 396
            ++S++QL  +++  + E+N  Q+S N ++   +R E + +AL D+ +   G   L+PL+ SLY+   L D  K LV+IGTGYFVE   ++ K   +RK   +    + +  +  +K+     ISD     +Q++L
Sbjct:   12 ELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTALIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVETVEGILKEKRRTRAYISDAFQTKVQSQL 146          
The following BLAST results are available for this feature:
BLAST of FC873442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD5_ARATH4.323e-5879.71Probable prefoldin subunit 5 OS=Arabidopsis thalia... [more]
PFD5_PONAB2.739e-2034.33Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 ... [more]
PFD5_MOUSE3.577e-2034.33Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=2 ... [more]
PFD5_HUMAN3.577e-2034.33Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 ... [more]
PFD5_BOVIN3.577e-2034.33Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV... [more]
PFD5_DICDI1.662e-1733.08Probable prefoldin subunit 5 OS=Dictyostelium disc... [more]
PFD5_DROME3.702e-1731.39Probable prefoldin subunit 5 OS=Drosophila melanog... [more]
PFD5_YEAST1.115e-1334.07Prefoldin subunit 5 OS=Saccharomyces cerevisiae GN... [more]
PFD5_SCHPO3.243e-1335.88Probable prefoldin subunit 5 OS=Schizosaccharomyce... [more]
PFD5_CAEEL1.232e-1231.11Probable prefoldin subunit 5 OS=Caenorhabditis ele... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CC04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873442 ID=FC873442; Name=FC873442; organism=Citrus clementina; type=EST; length=721bp
GAGAAGATGAGCGTAGAGCAACTAAAAGCAATAAAAGAACAGACGGATCT
AGAAGTCAATCTCTTACAAGACAGTCTCAACAACATCCGTACCGCCACCT
CTCGCCTCGAGTCGGCTTCCACTGCTCTCCACGATCTTTCCCTCCGTCCT
CAAGGTGCCAAAATGTTGGTACCTCTTACGGCGTCGCTTTACGTTCCTGG
CACTCTCGATGACGCCCACAAAGTTCTCGTCGATATCGGCACCGGTTACT
TCGTTGAGAAAACGATGGATGAAGGCAAAGATTACTGTGAGCGTAAAATC
AACTTGCTGAAATCTAATTTTGATCAGCTCATTGAGGTTGCAACAAAAAA
GAAAACTATTTCAGACGAAGCTGCTGTAATCTTGCAGGCAAAACTGAAGC
AGTTAGCACCTGCTAGTTCCTCCTGATTGCTTCGAGTGCTTGTTTTTCTG
TGCTTTGTTTCATTCAGAACCAGGGATGGTCTTCTCAGCTGAAATCAAAT
CAGACTTGGATGTAGGTATTCAGATATATCAATGTTGACATGTAATACAC
AGTGGGACGATACTTTTATTACCTTTACAAGTTAGTTGCGGTAATCATGT
TTTTCACATTCTACCTCTTGCCCCACCTTGTTTCTTCTGGTTTTTCAAGT
TGAATATGGTTACATCATTTTGTTTATCTATGCCTTGTTTTGCGTTGCTA
TAAAAAAAAAAAAAAAAAAAA
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