FC873533

Overview
NameFC873533
Unique NameFC873533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10153 contig Ccv1_Contig10153:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            F L DLE AT +F+   +LGEGG+G VY G + NGTEVAVK L  N    ++EF  EVE +  + H+NLV+L+G CIEG  R LVYE V  G++E  LHG
Sbjct:  171 FTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHG 270          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.252e-22
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  447 LSVKTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDN-GTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLH 758
            ++  TFA  +L  AT  F     LGEGGFG VY G +D+ G  VAVK L RN   G+REF+ EV MLS LHH NLV LIG C +G  R LVYE +  GS+E HLH
Sbjct:   69 IAAHTFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLH 173          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.461e-22
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            + L +LE AT     + ++GEGG+G VY G++ +GT+VAVK L  N    ++EF  EVE++ R+ H+NLV+L+G C+EG  R LVY+ V +G++E  +HG
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHG 241          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 3
Query:  459 TFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            TF  S+L+ AT+ F     LGEGGFG VY G +++G EVAVKLL+  ++ G  +F+AE+  +S + HRNLVKL G C EG  R LVYE + +GS++  L G
Sbjct:  680 TFTYSELKSATQDFDPSNKLGEGGFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFG 780          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: RLK7_ARATH (Receptor-like protein kinase At5g59670 OS=Arabidopsis thaliana GN=At5g59670 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            K F  S++ + T+ F  +R+LG+GGFG VYHG +    +VAVK+L++++  G +EF AEV++L R+HH NLV L+G C EG    LVYE + +G ++ HL G
Sbjct:  552 KRFTYSEVVQVTKNF--QRVLGKGGFGMVYHGTVKGSEQVAVKVLSQSSTQGSKEFKAEVDLLLRVHHTNLVSLVGYCCEGDYLALVYEFLPNGDLKQHLSG 651          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLH 758
            + F+LS+++  T  F    ++G GGFG VY GV+D GT+VA+K    N++ G  EF  E+E+LSRL H++LV LIG C EG   CL+Y+ +  G++  HL+
Sbjct:  507 RRFSLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDGGTKVAIKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLY 607          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  465 ALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            +L  LE+AT+ FS K  +G G FG VY+G M +G EVAVK+    + + +R+F+ EV +LSR+HHRNLV LIG C E   R LVYE + +GS+  HLHG
Sbjct:  597 SLPVLEEATDNFSKK--VGRGSFGSVYYGRMKDGKEVAVKITADPSSHLNRQFVTEVALLSRIHHRNLVPLIGYCEEADRRILVYEYMHNGSLGDHLHG 693          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 46/102 (45.10%), Postives = 69/102 (67.65%), Query Frame = 3
Query:  456 KTFALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHLHG 761
            + F  S++   T  F  +R+LG+GGFG VYHG ++N  +VAVK+L+ ++  G +EF AEVE+L R+HH+NLV L+G C EG    L+YE + +G +  H+ G
Sbjct:  580 RRFTYSEVVTMTNNF--ERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSG 679          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVE 746
            F L  +  AT++FSS+  LG+GGFG VY G + NG EVAVK LT+ +  GD EF  EV +L+RL HRNLVKL+G C EG  + LVYE V + S++
Sbjct:  341 FDLGMVLAATDEFSSENTLGQGGFGTVYKGTLLNGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLD 435          
BLAST of FC873533 vs. ExPASy Swiss-Prot
Match: CRK14_ARATH (Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 3
Query:  462 FALSDLEKATEKFSSKRILGEGGFGCVYHGVMDNGTEVAVKLLTRNNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVXHGSVESHL 755
            F    +E AT KFS   I+G GGFG V+ GV+ NGTEVA+K L++ ++ G REF  EV ++++LHHRNLVKL+G C+EG  + LVYE V + S++  L
Sbjct:  325 FDFKAIEDATNKFSESNIIGRGGFGEVFMGVL-NGTEVAIKRLSKASRQGAREFKNEVVVVAKLHHRNLVKLLGFCLEGEEKILVYEFVPNKSLDYFL 421          
The following BLAST results are available for this feature:
BLAST of FC873533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
Y2296_ARATH6.552e-2353.00Probable receptor-like protein kinase At2g42960 OS... [more]
PBS1_ARATH3.252e-2254.29Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y1154_ARATH9.461e-2245.00Probable serine/threonine-protein kinase At1g01540... [more]
Y5614_ARATH4.695e-2149.50Probable LRR receptor-like serine/threonine-protei... [more]
RLK7_ARATH1.046e-2046.08Receptor-like protein kinase At5g59670 OS=Arabidop... [more]
ANX2_ARATH1.046e-2044.55Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
Y1677_ARATH1.784e-2051.52Probable LRR receptor-like serine/threonine-protei... [more]
RLK6_ARATH1.784e-2045.10Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
CRK39_ARATH1.784e-2053.68Putative cysteine-rich receptor-like protein kinas... [more]
CRK14_ARATH1.784e-2051.02Cysteine-rich receptor-like protein kinase 14 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CH08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873533 ID=FC873533; Name=FC873533; organism=Citrus clementina; type=EST; length=766bp
TTGATAATACCACAGCAGTTCTGACATATGACAGACTGTGGCATAAGAAA
GTTCCTTTAAATTTGACTCTATTTGGTATTTATGAAGTCATTTATATCAG
CTATCCAGGTATTCCTTCTTCTCCGCCATATGAGAGTTCTACAGAGAGTG
GTCCAAGTGTTAGTGTTGGATCTCTCCCTTTCTCTGCAAACTTTGGAAAT
AAAAATCAGCGGATGAATTTCAGAACCATTGCTATCATTGCTTTGTCTGC
ATTTGTACTCTTACTGGTTTTTGTTGGAGCAATATCCATCCTTATAAAAT
GGAGGAAGGCTAGAAAACCATCAAGTGCTGTTGGCCCTGCCTTTGCATCA
TCTATAAACAAAAGATCCGGCATTGGGTCTATCTTATCTAGTAGTATTGC
TAGCTCAACCTCAGTGTCGCTCATGTCCACCATGGCTACTTGTATCCTCT
CTGTTAAAACATTTGCACTTTCTGATCTTGAGAAGGCAACAGAGAAATTC
AGTTCCAAGAGAATTTTGGGGGAAGGAGGTTTTGGGTGTGTTTACCATGG
TGTTATGGACAATGGAACTGAAGTTGCAGTGAAGCTGCTAACAAGAAATA
ATCAGAATGGGGACCGTGAATTTATTGCAGAAGTAGAGATGCTAAGCAGA
TTACATCATCGTAATCTCGTGAAATTGATCGGTATATGCATTGAAGGACG
CACGCGCTGCTTGGTGTATGAACTTGTTNCACATGGCAGTGTTGAGTCAC
ACCTGCATGGTGTTGA
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