FC873538

Overview
NameFC873538
Unique NameFC873538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:1218..2050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.341e-32
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 236
            D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  359 DAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.897e-32
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 236
            DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  358 DSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.275e-26
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   24 LEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 230
            L+V+EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  367 LDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.574e-20
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 230
            D  T  E+E+ E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  359 DKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.507e-20
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD-DGEIYDDSE 236
            D  +  + E+ E+  ++EWFAN Y+ FG +LEFVTNKSQEGSQFC+GFGG+GG+LRYQ+D    ++F + D   YDDS+
Sbjct:  360 DKESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSD 438          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.473e-18
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 227
            D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  D    D E +D
Sbjct:  359 DKETGQEHELIESMPLLEWFANSYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMDYQGVDDEFFD 433          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 230
            D  +  E+E+ E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  360 DKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 227
            D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  359 DKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 227
            D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  359 DKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of FC873538 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.513e-18
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    3 DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 227
            D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  359 DKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of FC873538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1Z_ARATH2.341e-3283.33Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH8.897e-3283.33Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH3.275e-2682.61Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI1.574e-2057.89Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI3.507e-2054.43Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA1.473e-1858.67Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME1.924e-1857.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR2.513e-1857.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.513e-1857.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.513e-1857.33Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BE02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873538 ID=FC873538; Name=FC873538; organism=Citrus clementina; type=EST; length=833bp
GTGATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGTCATCGCTG
CTTGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACACTCGAGTT
TGTTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGGCTTTGGCG
GTATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCATTTGATGAG
TTTTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAATCAATCAA
ACCTACCCAATTGCTGGTGCAGGATGACGACGTGAAGGGCCTGCACCAGC
GCGCGATTCGTCGCGCCAACTTCGGAGTACCTATGTTCCAAAATGTTCCC
AAGTTGCTGCTGAGGTACGATTATGTCATGTCTTAGCTGAGCAAGCTATC
TATGATTCTGTTATATGGGCTTTGTAATGGCGCTGCTGGATATGATCCAG
AAGGGAGGAATTATGCAAAGCTACTAGCTCCAGAAGGGAGGAATTATGCA
AAGCTACTAGCTAATGTTGGTTAGGACCTTACGAATACCTCGCATTCAGA
TGATGGATATGGGGATCTCTCCCATGGCAAGCCCTAGGGGCTTGTGGATT
GAAACTGTTCTCTCAGACTTGGGTTTATCTTTTTATGGTTCTATTGTCTG
TACAATGCATGTTAATCAGTGTGATGGATCTCCTGTTGTCTGTCGGACTG
GGTTATTTGTTTTAGGTTATGTTGTTTAAACATGCTTGTTAGATCTCCAT
CTTTGGTAGGCCATGGCTTGCTATAATAATAAAGTGATACTGTTTTGTTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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